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Yorodumi- PDB-1mr6: Solution Structure of gamma-Bungarotoxin:Implication for the role... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1mr6 | ||||||
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Title | Solution Structure of gamma-Bungarotoxin:Implication for the role of the Residues Adjacent to RGD in Integrin Binding | ||||||
Components | neurotoxin | ||||||
Keywords | TOXIN / neurotoxin / venom | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Bungarus multicinctus (many-banded krait) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Chuang, W.-J. / Shiu, J.-H. / Chen, C.-Y. / Chen, Y.-C. / Chang, L.-S. | ||||||
Citation | Journal: Proteins / Year: 2004 Title: Solution structure of gamma-bungarotoxin: The functional significance of amino acid residues flanking the RGD motif in integrin binding Authors: Shiu, J.-H. / Chen, C.-Y. / Chang, L.-S. / Chen, Y.-C. / Chen, Y.-C. / Lo, Y.-H. / Liu, Y.-C. / Chuang, W.-J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mr6.cif.gz | 394.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mr6.ent.gz | 340.4 KB | Display | PDB format |
PDBx/mmJSON format | 1mr6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1mr6_validation.pdf.gz | 344.6 KB | Display | wwPDB validaton report |
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Full document | 1mr6_full_validation.pdf.gz | 536.4 KB | Display | |
Data in XML | 1mr6_validation.xml.gz | 43.5 KB | Display | |
Data in CIF | 1mr6_validation.cif.gz | 66.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mr/1mr6 ftp://data.pdbj.org/pub/pdb/validation_reports/mr/1mr6 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7545.709 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bungarus multicinctus (many-banded krait) / References: UniProt: Q9W796, UniProt: Q9YGJ0*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: the structures are based on a total of 817 restraints, 770 are NOE-derived distance constraints, 47 dihedral angle restraints | ||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 20 |