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- PDB-1cdp: RESTRAINED LEAST SQUARES REFINEMENT OF NATIVE (CALCIUM) AND CADMI... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1cdp | ||||||
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Title | RESTRAINED LEAST SQUARES REFINEMENT OF NATIVE (CALCIUM) AND CADMIUM-SUBSTITUTED CARP PARVALBUMIN USING X-RAY CRYSTALLOGRAPHIC DATA AT 1.6-ANGSTROMS RESOLUTION | ||||||
![]() | CADMIUM-SUBSTITUTED CALCIUM-BINDING PARVALBUMIN B | ||||||
![]() | CALCIUM BINDING | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Swain, A.L. / Kretsinger, R.H. / Amma, E.L. | ||||||
![]() | ![]() Title: Restrained least squares refinement of native (calcium) and cadmium-substituted carp parvalbumin using X-ray crystallographic data at 1.6-A resolution. Authors: Swain, A.L. / Kretsinger, R.H. / Amma, E.L. #1: ![]() Title: The Coordination Polyhedron of Ca2+,Cd2+ in Parvalbumin Authors: Swain, A.L. / Amma, E.L. #2: ![]() Title: Refinement of the Structure of Carp Muscle Calcium-Binding Parvalbumin by Model Building and Difference Fourier Analysis Authors: Moews, P.C. / Kretsinger, R.H. #3: ![]() Title: Terbium Replacement of Calcium in Carp Muscle Calcium-Binding Parvalbumin,an X-Ray Crystallographic Study Authors: Moews, P.C. / Kretsinger, R.H. #4: ![]() Title: Troponin and Parvalbumin Calcium Binding Regions Predicted in Myosin Light Chain and T4 Lysozyme Authors: Tufty, R.M. / Kretsinger, R.H. #5: ![]() Title: Calcium Binding Proteins and Natural Membranes Authors: Kretsinger, R.H. #6: ![]() Title: The Coordination of Calcium Ions by Carp Muscle Calcium-Binding Proteins A,B,and C Authors: Coffee, C.J. / Bradshaw, R.A. / Kretsinger, R.H. #7: ![]() Title: Carp Muscle Calcium-Binding Protein, I.Characterization of the Tryptic Peptides and the Complete Amino Acid Sequence of Component B Authors: Coffee, C.J. / Bradshaw, R.A. #8: ![]() Title: Carp Muscle Calcium-Binding Protein, II.Structure Determination and General Description Authors: Kretsinger, R.H. / Nockolds, C.E. #9: ![]() Title: Carp Muscle Calcium-Binding Protein, III.Phase Refinement Using the Tangent Formula Authors: Hendrickson, W.A. / Karle, J. #10: ![]() Title: Gene Duplication in Carp Muscle Calcium Binding Protein Authors: Mclachlan, A.D. #11: ![]() Title: Gene Triplication Deduced from the Tertiary Structure of a Muscle Calcium Binding Protein Authors: Kretsinger, R.H. #12: ![]() Title: Structure of a Calcium Binding Carp Myogen Authors: Nockolds, C.E. / Kretsinger, R.H. / Coffee, C.J. / Bradshaw, R.A. #13: ![]() Title: The Structure of a Calcium-Binding Protein from Carp Muscle Authors: Kretsinger, R.H. / Nockolds, C.E. / Coffee, C.J. / Bradshaw, R.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 31.1 KB | Display | ![]() |
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PDB format | ![]() | 23.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 364 KB | Display | ![]() |
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Full document | ![]() | 364.9 KB | Display | |
Data in XML | ![]() | 3.8 KB | Display | |
Data in CIF | ![]() | 5.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: HOH 116 IS THE SEVENTH LIGAND FOR CD 109. |
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Components
#1: Protein | Mass: 11476.829 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.02 Å3/Da / Density % sol: 39.11 % |
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Crystal grow | *PLUS Temperature: 18 ℃ / Method: vapor diffusion, sitting drop |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.6→10 Å / Rfactor obs: 0.164 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.6→10 Å
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Refine LS restraints |
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Refinement | *PLUS Num. reflection obs: 8833 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 16.7 Å2 |