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Open data
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Basic information
Entry | Database: PDB / ID: 1bxv | ||||||
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Title | REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP. | ||||||
![]() | PLASTOCYANIN | ||||||
![]() | COPPER PROTEIN / ELECTRON TRANSFER | ||||||
Function / homology | ![]() electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity / plasma membrane-derived thylakoid membrane / copper ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Inoue, T. / Sugawara, H. / Hamanaka, S. / Tsukui, H. / Suzuki, E. / Kohzuma, T. / Kai, Y. | ||||||
![]() | ![]() Title: Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942. Authors: Inoue, T. / Sugawara, H. / Hamanaka, S. / Tsukui, H. / Suzuki, E. / Kohzuma, T. / Kai, Y. #1: ![]() Title: Crystallization and Preliminary X-Ray Analysis of Plastocyanin from Cyanobacterium Synechococcus Sp. Pcc 7942 Authors: Inoue, T. / Sugawara, H. / Hamanaka, S. / Tsukui, H. / Suzuki, E. / Kohzuma, T. / Kai, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 31.6 KB | Display | ![]() |
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PDB format | ![]() | 20.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 404.6 KB | Display | ![]() |
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Full document | ![]() | 405.3 KB | Display | |
Data in XML | ![]() | 6.7 KB | Display | |
Data in CIF | ![]() | 8.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 9861.011 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: REDUCED FORM / Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-CU / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 54.5 % | |||||||||||||||
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Crystal grow | pH: 5 / Details: pH 5.0 | |||||||||||||||
Crystal grow | *PLUS Method: unknown | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 300 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: WEISSENBERG / Detector: DIFFRACTOMETER / Date: Dec 1, 1997 |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→30 Å / Num. obs: 9370 / % possible obs: 96.2 % / Redundancy: 3.6 % / Rmerge(I) obs: 0.061 |
Reflection shell | Resolution: 1.8→1.86 Å / Rmerge(I) obs: 0.201 / % possible all: 76.9 |
Reflection | *PLUS Num. obs: 9373 / Num. measured all: 43919 |
Reflection shell | *PLUS % possible obs: 77.1 % / Rmerge(I) obs: 0.203 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: OXIDIZED FORM Resolution: 1.8→10 Å / SU B: 2.39 / SU ML: 0.07 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.12 / ESU R Free: 0.11
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Displacement parameters | Biso mean: 21.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→10 Å
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Refine LS restraints |
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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