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Open data
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Basic information
Entry | Database: PDB / ID: 1bj7 | ||||||
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Title | BOVINE LIPOCALIN ALLERGEN BOS D 2 | ||||||
![]() | D 2 | ||||||
![]() | ALLERGEN / LIPOCALIN | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Rouvinen, J. | ||||||
![]() | ![]() Title: Probing the molecular basis of allergy. three-dimensional structure of the bovine lipocalin allergen Bos d 2. Authors: Rouvinen, J. / Rautiainen, J. / Virtanen, T. / Zeiler, T. / Kauppinen, J. / Taivainen, A. / Mantyjarvi, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 39.3 KB | Display | ![]() |
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PDB format | ![]() | 29.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 409.5 KB | Display | ![]() |
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Full document | ![]() | 410.4 KB | Display | |
Data in XML | ![]() | 8.3 KB | Display | |
Data in CIF | ![]() | 10.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1mupS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17867.984 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.23 Å3/Da / Density % sol: 45 % | ||||||||||||||||||||
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Crystal grow | pH: 4 / Details: pH 4 | ||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging dropDetails: Rautiainen, J., (1998) Biochem. Biophys. Res. Commun., 247, 746. PH range low: 4.5 / PH range high: 3.4 | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Jan 8, 1998 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→99 Å / Num. obs: 41606 / % possible obs: 92.3 % / Observed criterion σ(I): 1 / Redundancy: 2.9 % / Rmerge(I) obs: 0.066 |
Reflection shell | Resolution: 1.8→1.86 Å / Rmerge(I) obs: 0.542 / % possible all: 60.3 |
Reflection | *PLUS Num. obs: 14230 / Num. measured all: 41606 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1MUP Resolution: 1.8→8 Å / Data cutoff high absF: 100000000 / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT / σ(F): 1
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Displacement parameters | Biso mean: 24.7 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→8 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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