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- PDB-1mup: PHEROMONE BINDING TO TWO RODENT URINARY PROTEINS REVEALED BY X-RA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1mup | ||||||
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Title | PHEROMONE BINDING TO TWO RODENT URINARY PROTEINS REVEALED BY X-RAY CRYSTALLOGRAPHY | ||||||
![]() | MAJOR URINARY PROTEIN | ||||||
![]() | PHEROMONE-BINDING | ||||||
Function / homology | ![]() positive regulation of lipid metabolic process / pheromone binding / negative regulation of lipid biosynthetic process / energy reserve metabolic process / odorant binding / positive regulation of glucose metabolic process / insulin receptor activity / negative regulation of insulin secretion involved in cellular response to glucose stimulus / cellular response to lipid / heat generation ...positive regulation of lipid metabolic process / pheromone binding / negative regulation of lipid biosynthetic process / energy reserve metabolic process / odorant binding / positive regulation of glucose metabolic process / insulin receptor activity / negative regulation of insulin secretion involved in cellular response to glucose stimulus / cellular response to lipid / heat generation / locomotor rhythm / negative regulation of lipid storage / small molecule binding / negative regulation of gluconeogenesis / aerobic respiration / mitochondrion organization / glucose homeostasis / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / negative regulation of DNA-templated transcription / positive regulation of gene expression / extracellular space / nucleus / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Bocskei, Z. / Flower, D.R. / Groom, C.R. / Phillips, S.E.V. / North, A.C.T. | ||||||
![]() | ![]() Title: Pheromone binding to two rodent urinary proteins revealed by X-ray crystallography. Authors: Bocskei, Z. / Groom, C.R. / Flower, D.R. / Wright, C.E. / Phillips, S.E. / Cavaggioni, A. / Findlay, J.B. / North, A.C. #1: ![]() Title: Pheromone Binding Proteins of the Mouse (Mus Musculus) Authors: Bacchini, A. / Gaetani, E. / Cavaggioni, A. #2: ![]() Title: Crystallization of and Preliminary X-Ray Data for the Mouse Major Urinary Protein and Rat Alpha-2U Globulin Authors: Bocskei, Z. / Findlay, J.B.C. / North, A.C.T. / Phillips, S.E.V. / Somers, W.S. / Wright, C.E. / Lionetti, C. / Tirindelli, R. / Cavaggioni, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 43.9 KB | Display | ![]() |
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PDB format | ![]() | 32.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 390.9 KB | Display | ![]() |
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Full document | ![]() | 420.9 KB | Display | |
Data in XML | ![]() | 9.4 KB | Display | |
Data in CIF | ![]() | 12.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 19130.289 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() | ||||||
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#2: Chemical | ChemComp-CD / #3: Chemical | ChemComp-TZL / | #4: Water | ChemComp-HOH / | Nonpolymer details | THE ENTRY INCLUDES FOUR CADMIUM IONS WITH VARYING OCCUPANCIE | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.36 Å3/Da / Density % sol: 47.87 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 5.5 / Method: vapor diffusion, hanging dropDetails: taken from Bocskei, Z. et al (1991). J. Mol. Biol., 218, 699-701. | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
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Processing
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Refinement | Resolution: 2.4→14 Å / Rfactor Rwork: 0.191 / Rfactor obs: 0.191 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→14 Å
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Refine LS restraints |
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Software | *PLUS Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 14 Å / Rfactor obs: 0.191 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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