+Open data
-Basic information
Entry | Database: PDB / ID: 1bhg | |||||||||
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Title | HUMAN BETA-GLUCURONIDASE AT 2.6 A RESOLUTION | |||||||||
Components | BETA-GLUCURONIDASE | |||||||||
Keywords | GLYCOSIDASE / LYSOSOMAL ENZYME / ACID HYDROLASE | |||||||||
Function / homology | Function and homology information MPS VII - Sly syndrome / chondroitin sulfate catabolic process / glucuronoside catabolic process / glycosaminoglycan catabolic process / Hyaluronan uptake and degradation / beta-glucuronidase activity / heparan sulfate proteoglycan catabolic process / beta-glucuronidase / HS-GAG degradation / hyaluronan catabolic process ...MPS VII - Sly syndrome / chondroitin sulfate catabolic process / glucuronoside catabolic process / glycosaminoglycan catabolic process / Hyaluronan uptake and degradation / beta-glucuronidase activity / heparan sulfate proteoglycan catabolic process / beta-glucuronidase / HS-GAG degradation / hyaluronan catabolic process / lysosomal lumen / azurophil granule lumen / carbohydrate binding / ficolin-1-rich granule lumen / carbohydrate metabolic process / protein domain specific binding / signaling receptor binding / intracellular membrane-bounded organelle / Neutrophil degranulation / extracellular space / extracellular exosome / extracellular region / membrane Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 2.53 Å | |||||||||
Authors | Jain, S. / Drendel, W.B. | |||||||||
Citation | Journal: Nat.Struct.Biol. / Year: 1996 Title: Structure of human beta-glucuronidase reveals candidate lysosomal targeting and active-site motifs. Authors: Jain, S. / Drendel, W.B. / Chen, Z.W. / Mathews, F.S. / Sly, W.S. / Grubb, J.H. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystallization and Preliminary Crystallographic Studies of Human Beta-Glucuronidase Authors: Drendel, W.B. / Grubb, J.H. / Sly, W.S. / Chen, Z. / Mathews, F.S. / Jain, S. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bhg.cif.gz | 251.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bhg.ent.gz | 204.1 KB | Display | PDB format |
PDBx/mmJSON format | 1bhg.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bh/1bhg ftp://data.pdbj.org/pub/pdb/validation_reports/bh/1bhg | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 70762.867 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: LYSOSOMAL ENZYME / Source: (gene. exp.) Homo sapiens (human) / Cell line: MOUSE L-CELL LINE / Gene: HUMAN PLACENTAL GUS GENE CDNA / Organ: PLACENTA / Organelle: LYSOSOME / Plasmid: PMSXND / Gene (production host): HUMAN PLACENTAL GUS GENE CDNA / Production host: Mus musculus (house mouse) / References: UniProt: P08236, beta-glucuronidase #2: Polysaccharide | Source method: isolated from a genetically manipulated source |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.81 Å3/Da / Density % sol: 49.4 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: XUONG-HAMLIN MULTIWIRE / Detector: AREA DETECTOR / Date: Feb 10, 1993 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 46839 / % possible obs: 93.23 % / Observed criterion σ(I): 1 / Redundancy: 4.71 % / Rmerge(I) obs: 0.0779 |
Reflection | *PLUS Highest resolution: 2.6 Å / Lowest resolution: 20 Å |
-Processing
Software |
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Refinement | Resolution: 2.53→7 Å / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 2.53→7 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |