+Open data
-Basic information
Entry | Database: PDB / ID: 1be3 | ||||||
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Title | CYTOCHROME BC1 COMPLEX FROM BOVINE | ||||||
Components | (CYTOCHROME BC1 ...Coenzyme Q – cytochrome c reductase) x 11 | ||||||
Keywords | ELECTRON TRANSPORT / CYTOCHROME / MEMBRANE PROTEIN | ||||||
Function / homology | Function and homology information mitochondrial respiratory chain complex III assembly / Respiratory electron transport / mitochondrial respiratory chain complex III / mitochondrial respiratory chain complex IV / quinol-cytochrome-c reductase / ubiquinone binding / ubiquinol-cytochrome-c reductase activity / mitochondrial electron transport, ubiquinol to cytochrome c / respirasome / respiratory electron transport chain ...mitochondrial respiratory chain complex III assembly / Respiratory electron transport / mitochondrial respiratory chain complex III / mitochondrial respiratory chain complex IV / quinol-cytochrome-c reductase / ubiquinone binding / ubiquinol-cytochrome-c reductase activity / mitochondrial electron transport, ubiquinol to cytochrome c / respirasome / respiratory electron transport chain / mitochondrial membrane / 2 iron, 2 sulfur cluster binding / metalloendopeptidase activity / mitochondrial inner membrane / oxidoreductase activity / heme binding / mitochondrion / proteolysis / membrane / metal ion binding Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 3 Å | ||||||
Authors | Iwata, S. / Lee, J.W. / Okada, K. / Lee, J.K. / Iwata, M. / Ramaswamy, S. / Jap, B.K. | ||||||
Citation | Journal: Science / Year: 1998 Title: Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex. Authors: Iwata, S. / Lee, J.W. / Okada, K. / Lee, J.K. / Iwata, M. / Rasmussen, B. / Link, T.A. / Ramaswamy, S. / Jap, B.K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1be3.cif.gz | 411.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1be3.ent.gz | 342.3 KB | Display | PDB format |
PDBx/mmJSON format | 1be3.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/be/1be3 ftp://data.pdbj.org/pub/pdb/validation_reports/be/1be3 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
-CYTOCHROME BC1 ... , 11 types, 11 molecules ABCDEFGHIJK
#1: Protein | Mass: 49266.254 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P31800, quinol-cytochrome-c reductase |
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#2: Protein | Mass: 46575.469 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P23004, quinol-cytochrome-c reductase |
#3: Protein | Mass: 42620.340 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P00157, quinol-cytochrome-c reductase |
#4: Protein | Mass: 27323.277 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P00125, quinol-cytochrome-c reductase |
#5: Protein | Mass: 21640.580 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P13272, quinol-cytochrome-c reductase |
#6: Protein | Mass: 13371.190 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P00129, quinol-cytochrome-c reductase |
#7: Protein | Mass: 9606.027 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P13271, quinol-cytochrome-c reductase |
#8: Protein | Mass: 9189.116 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P00126, quinol-cytochrome-c reductase |
#9: Protein | Mass: 7964.259 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P13272, quinol-cytochrome-c reductase |
#10: Protein | Mass: 7209.311 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P00130, quinol-cytochrome-c reductase |
#11: Protein | Mass: 6370.390 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) Cellular location: MITOCHONDRIAL INNER MEMBRANEInner mitochondrial membrane Organ: HEART / Organelle: MITOCHONDRION / Tissue: HEART MUSCLE / References: UniProt: P07552, quinol-cytochrome-c reductase |
-Non-polymers , 3 types, 4 molecules
#12: Chemical | #13: Chemical | ChemComp-HEC / | #14: Chemical | ChemComp-FES / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 4.52 Å3/Da / Density % sol: 69.3 % | ||||||||||||||||||||||||
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Crystal grow | pH: 6.6 / Details: pH 6.6 | ||||||||||||||||||||||||
Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID2 / Wavelength: 0.99 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Sep 1, 1997 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.99 Å / Relative weight: 1 |
Reflection | Resolution: 3→40 Å / Num. obs: 79396 / % possible obs: 88.9 % / Redundancy: 2.8 % / Biso Wilson estimate: 37.4 Å2 / Rmerge(I) obs: 0.07 / Net I/σ(I): 12.6 |
Reflection shell | Resolution: 3→3.11 Å / Rmerge(I) obs: 0.266 / Mean I/σ(I) obs: 2.6 / % possible all: 76.8 |
Reflection | *PLUS Num. measured all: 223182 |
Reflection shell | *PLUS % possible obs: 76.8 % |
-Processing
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Refinement | Method to determine structure: MIR / Resolution: 3→40 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Displacement parameters | Biso mean: 30 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→40 Å
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Refine LS restraints |
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