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Yorodumi- PDB-1bbh: ATOMIC STRUCTURE OF A CYTOCHROME C' WITH AN UNUSUAL LIGAND-CONTRO... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1bbh | |||||||||
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Title | ATOMIC STRUCTURE OF A CYTOCHROME C' WITH AN UNUSUAL LIGAND-CONTROLLED DIMER DISSOCIATION AT 1.8 ANGSTROMS RESOLUTION | |||||||||
Components | CYTOCHROME C' | |||||||||
Keywords | ELECTRON TRANSPORT(HEME PROTEIN) | |||||||||
Function / homology | Function and homology information electron transfer activity / periplasmic space / iron ion binding / heme binding Similarity search - Function | |||||||||
Biological species | Allochromatium vinosum (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | |||||||||
Authors | Ren, Z. / Mcree, D.E. | |||||||||
Citation | Journal: J.Mol.Biol. / Year: 1993 Title: Atomic structure of a cytochrome c' with an unusual ligand-controlled dimer dissociation at 1.8 A resolution. Authors: Ren, Z. / Meyer, T. / McRee, D.E. #1: Journal: J.Mol.Biol. / Year: 1990 Title: Crystallization and Characterization of Chromatium Vinosum Cytochrome C' Authors: Mcree, D.E. / Redford, S.M. / Meyer, T.E. / Cusanovich, M.A. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bbh.cif.gz | 62.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bbh.ent.gz | 50.9 KB | Display | PDB format |
PDBx/mmJSON format | 1bbh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bb/1bbh ftp://data.pdbj.org/pub/pdb/validation_reports/bb/1bbh | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 13806.436 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Allochromatium vinosum (bacteria) / References: UniProt: P00154 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 50.7 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7 / Method: vapor diffusion, sitting drop / Details: using macroseeding | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 3.3 Å / Num. all: 26336 / Num. obs: 25244 / % possible obs: 96 % / Num. measured all: 102043 / Rmerge(I) obs: 0.069 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 1.9 Å / % possible obs: 95 % / Mean I/σ(I) obs: 28.8 / Num. possible: 4304 / Num. unique obs: 4102 / Num. measured obs: 14700 / Rmerge(I) obs: 0.29 |
-Processing
Software |
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Refinement | Resolution: 1.8→5 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 1.8→5 Å
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||
Refinement | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 5 Å / Num. reflection obs: 21287 / σ(F): 2 / Rfactor obs: 0.185 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
LS refinement shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 1.88 Å / Total num. of bins used: 8 / Num. reflection obs: 1798 / Rfactor obs: 0.301 |