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Yorodumi- PDB-1b9q: NMR STRUCTURE OF HEPARIN BINDING SITE OF NON COLLAGENOUS DOMAIN I... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1b9q | ||||||
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Title | NMR STRUCTURE OF HEPARIN BINDING SITE OF NON COLLAGENOUS DOMAIN I (NC1) OF COLLAGEN FACIT XIV | ||||||
Components | PROTEIN (COLLAGEN ALPHA 1) | ||||||
Keywords | COLLAGEN FACIT XIV / HEPARIN-BINDING SITE / NC1 | ||||||
Function / homology | Function and homology information interstitial matrix / collagen trimer / cell adhesion / extracellular region Similarity search - Function | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / distance geometry | ||||||
Authors | Montserret, R. / Deleage, G. / Penin, F. | ||||||
Citation | Journal: Biochemistry / Year: 1999 Title: Structural analysis of the heparin-binding site of the NC1 domain of collagen XIV by CD and NMR. Authors: Montserret, R. / Aubert-Foucher, E. / McLeish, M.J. / Hill, J.M. / Ficheux, D. / Jaquinod, M. / van der Rest, M. / Deleage, G. / Penin, F. #1: Journal: Matrix Biol. / Year: 1998 Title: Identification and Characterization of a Heparin Binding Site within the NC1 Domain of Chicken Collagen XIV Authors: Giry-Lozinguez, C. / Aubert-Foucher, E. / Penin, F. / Deleage, G. / Dublet, B. / Van Der Rest, M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1b9q.cif.gz | 220.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1b9q.ent.gz | 181.8 KB | Display | PDB format |
PDBx/mmJSON format | 1b9q.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b9/1b9q ftp://data.pdbj.org/pub/pdb/validation_reports/b9/1b9q | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4020.755 Da / Num. of mol.: 1 / Fragment: FRAGMENT 84-116 OF NC1 (HEPARIN BINDING SITE) / Mutation: E1C / Source method: obtained synthetically Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PROTEIN IS NATURALLY FOUND EXTRACELLULARLY IN THE EMBRYO OF GALLUS GALLUS (CHICKEN). Source: (synth.) synthetic construct (others) / References: UniProt: P32018 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | pH: 6.0 / Pressure: 1 atm / Temperature: 293 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: distance geometry / Software ordinal: 1 | ||||||||||||
NMR ensemble | Conformer selection criteria: NO RESTRAINT VIOLATION / Conformers calculated total number: 50 / Conformers submitted total number: 19 |