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- PDB-1lyp: THE SOLUTION STRUCTURE OF THE ACTIVE DOMAIN OF CAP18: A LIPOPOLYS... -

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Basic information

Entry
Database: PDB / ID: 1lyp
TitleTHE SOLUTION STRUCTURE OF THE ACTIVE DOMAIN OF CAP18: A LIPOPOLYSACCHARIDE BINDING PROTEIN FROM RABBIT LEUKOCYTES
ComponentsCAP18
KeywordsLIPOPOLYSACCHARIDE-BINDING PROTEIN
Function / homology
Function and homology information


lipopolysaccharide binding / antimicrobial humoral immune response mediated by antimicrobial peptide / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / innate immune response / extracellular space
Similarity search - Function
Cathelicidin, antimicrobial peptide, C-terminal / LPS binding domain of CAP18 (C terminal) / Cathelicidins signature 1. / Cathelicidin, conserved site / Cathelicidins signature 2. / Cathelicidin-like / Cathelicidin / Cystatin superfamily
Similarity search - Domain/homology
Antimicrobial protein CAP18
Similarity search - Component
Biological speciesOryctolagus cuniculus (rabbit)
MethodSOLUTION NMR
AuthorsChen, C. / Huang, T.-H.
Citation
Journal: FEBS Lett. / Year: 1995
Title: The solution structure of the active domain of CAP18--a lipopolysaccharide binding protein from rabbit leukocytes.
Authors: Chen, C. / Brock, R. / Luh, F. / Chou, P.J. / Larrick, J.W. / Huang, R.F. / Huang, T.H.
#1: Journal: To be Published
Title: CAP18: A Novel Lps Binding(Slash)Antimicrobial Protein
Authors: Larrick, J.W. / Hirata, M. / Balint, R.F. / Huang, T.-H. / Chen, C. / Zhong, J. / Wright, S.C.
#2: Journal: Biochem.Biophys.Res.Commun. / Year: 1991
Title: Complementary DNA Sequence of Rabbit CAP18-A Unique Lipopolysaccharide Binding Protein
Authors: Larrick, J.W. / Morgan, J.G. / Palings, I. / Hirata, M. / Yen, M.H.
History
DepositionJan 12, 1995Processing site: BNL
Revision 1.0Mar 31, 1995Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 23, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: CAP18


Theoretical massNumber of molelcules
Total (without water)3,8141
Polymers3,8141
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: Protein/peptide CAP18


Mass: 3813.825 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Oryctolagus cuniculus (rabbit) / References: UniProt: P25230

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 1

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