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Yorodumi- PDB-1ao8: DIHYDROFOLATE REDUCTASE COMPLEXED WITH METHOTREXATE, NMR, 21 STRU... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ao8 | ||||||
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Title | DIHYDROFOLATE REDUCTASE COMPLEXED WITH METHOTREXATE, NMR, 21 STRUCTURES | ||||||
Components | DIHYDROFOLATE REDUCTASE | ||||||
Keywords | OXIDOREDUCTASE / INHIBITOR-ENZYME COMPLEX | ||||||
Function / homology | Function and homology information response to methotrexate / glycine biosynthetic process / dihydrofolate reductase / dihydrofolate reductase activity / tetrahydrofolate biosynthetic process / one-carbon metabolic process / NADP binding / response to antibiotic Similarity search - Function | ||||||
Biological species | Lactobacillus casei (bacteria) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Gargaro, A.R. / Soteriou, A. / Frenkiel, T.A. / Bauer, C.J. / Birdsall, B. / Polshakov, V.I. / Barsukov, I.L. / Roberts, G.C.K. / Feeney, J. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1998 Title: The solution structure of the complex of Lactobacillus casei dihydrofolate reductase with methotrexate. Authors: Gargaro, A.R. / Soteriou, A. / Frenkiel, T.A. / Bauer, C.J. / Birdsall, B. / Polshakov, V.I. / Barsukov, I.L. / Roberts, G.C. / Feeney, J. #1: Journal: J.Biol.Chem. / Year: 1982 Title: Crystal Structures of Escherichia Coli and Lactobacillus Casei Dihydrofolate Reductase Refined at 1.7 A Resolution. I. General Features and Binding of Methotrexate Authors: Bolin, J.T. / Filman, D.J. / Matthews, D.A. / Hamlin, R.C. / Kraut, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ao8.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1ao8.ent.gz | 922.7 KB | Display | PDB format |
PDBx/mmJSON format | 1ao8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ao/1ao8 ftp://data.pdbj.org/pub/pdb/validation_reports/ao/1ao8 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 18331.594 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Lactobacillus casei (bacteria) / Strain: METHOTREXATE-RESISTANT / Plasmid: PMT702 / Production host: Escherichia coli (E. coli) / Strain (production host): NF1 / References: UniProt: P00381, dihydrofolate reductase |
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#2: Chemical | ChemComp-MTX / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | Ionic strength: 150 mM / pH: 6.5 / Temperature: 308 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITY / Manufacturer: Varian / Model: UNITY / Field strength: 600 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE J. MOL. BIOL. PAPER, GARGARO ET AL. CITED ABOVE. | |||||||||
NMR ensemble | Conformer selection criteria: NO NOE VIOLATION / Conformers calculated total number: 21 / Conformers submitted total number: 21 |