[English] 日本語
![](img/lk-miru.gif)
- PDB-1akx: HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR,... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1akx | ||||||
---|---|---|---|---|---|---|---|
Title | HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||
![]() | TAR RNA | ||||||
![]() | RNA / TRANSCRIPTIONAL ACTIVATION / COMPLEX (RNA-LIGAND) / PROTEIN-RNA INTERACTIONS | ||||||
Function / homology | ARGININE / RNA / RNA (> 10)![]() | ||||||
Method | SOLUTION NMR / RANDOM COORDINATES, SIMULATED ANNEALING | ||||||
![]() | Brodsky, A.S. / Williamson, J.R. | ||||||
![]() | ![]() Title: Solution structure of the HIV-2 TAR-argininamide complex. Authors: Brodsky, A.S. / Williamson, J.R. #1: ![]() Title: Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents Authors: Gelbin, A. / Schneider, B. / Clowny, L. / Hsieh, S.-H. / Olsen, W.K. / Berman, H.M. #2: ![]() Title: The Structure of the Human Immunodeficiency Virus Type-1 Tar RNA Reveals Principles of RNA Recognition by Tat Protein Authors: Aboul-Ela, F. / Karn, J. / Varani, G. #3: ![]() Title: Role of RNA Structure in Arginine Recognition of Tar RNA Authors: Puglisi, J.D. / Chen, L. / Frankel, A.D. / Williamson, J.R. #4: ![]() Title: Conformation of the Tar RNA-Arginine Complex by NMR Spectroscopy Authors: Puglisi, J.D. / Tan, R. / Calnan, B.J. / Frankel, A.D. / Williamson, J.R. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 28.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 19.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: RNA chain | Mass: 9652.761 Da / Num. of mol.: 1 / Source method: obtained synthetically |
---|---|
#2: Chemical | ChemComp-ARG / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|---|
NMR experiment | Type: SEE PAPER |
-
Sample preparation
Sample conditions | pH: 6.4 / Temperature: 298 K |
---|---|
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
|
---|
-
Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software |
| ||||||||||||
Refinement | Method: RANDOM COORDINATES, SIMULATED ANNEALING / Software ordinal: 1 | ||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINTS AND LOWEST ENERGY Conformers calculated total number: 20 / Conformers submitted total number: 1 |