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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-9211 | |||||||||
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Title | Rabbit muscle aldolase using curated picks | |||||||||
![]() | Cryosparc v0 with curated picks sharpened | |||||||||
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Biological species | ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.63 Å | |||||||||
![]() | Bepler T / Morin A / Brasch J / Shapiro L / Noble AJ / Berger B | |||||||||
![]() | ![]() Title: Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs. Authors: Tristan Bepler / Andrew Morin / Alex J Noble / Julia Brasch / Lawrence Shapiro / Bonnie Berger / ![]() | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 59.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 17.4 KB 17.4 KB | Display Display | ![]() |
Images | ![]() | 119.5 KB | ||
Masks | ![]() | 64 MB | ![]() | |
Others | ![]() ![]() ![]() | 31.9 MB 59.2 MB 59.2 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 78.4 KB | Display | ![]() |
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Full document | ![]() | 77.5 KB | Display | |
Data in XML | ![]() | 493 B | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 9194C ![]() 9201C ![]() 9202C ![]() 9206C ![]() 9207C ![]() 9208C ![]() 9209C ![]() 9210C C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | Cryosparc v0 with curated picks sharpened | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.832 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Mask #1
File | ![]() | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Additional map: Cryosparc v0 with curated picks unsharpened
File | emd_9211_additional.map | ||||||||||||
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Annotation | Cryosparc v0 with curated picks unsharpened | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Cryosparc v0 with curated picks half map
File | emd_9211_half_map_1.map | ||||||||||||
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Annotation | Cryosparc v0 with curated picks half map | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Cryosparc v0 with curated picks half map
File | emd_9211_half_map_2.map | ||||||||||||
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Annotation | Cryosparc v0 with curated picks half map | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Rabbit muscle aldolase
Entire | Name: Rabbit muscle aldolase |
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Components |
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-Supramolecule #1: Rabbit muscle aldolase
Supramolecule | Name: Rabbit muscle aldolase / type: complex / ID: 1 / Parent: 0 / Details: Curated picks |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7 |
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Grid | Details: unspecified |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: SUPER-RESOLUTION / Digitization - Dimensions - Width: 7420 pixel / Digitization - Dimensions - Height: 7676 pixel / Number grids imaged: 1 / Average exposure time: 6.0 sec. / Average electron dose: 70.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.7 mm / Nominal magnification: 29000 |
Sample stage | Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |