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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-5011 | |||||||||
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Title | Crosslinked kinesin head-tail complex bound to the microtubule | |||||||||
![]() | null | |||||||||
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![]() | kinesin / microtubule / tail domain / cargo / switch I / regulation | |||||||||
Function / homology | tubulin complex / kinesin complex / Kinesin motor domain / Alpha tubulin / Beta tubulin![]() | |||||||||
Method | helical reconstruction / cryo EM / Resolution: 8.0 Å | |||||||||
![]() | Dietrich KA / Sindelar CV / Brewer PD / Downing KH / Cremo CR / Rice SE | |||||||||
![]() | ![]() Title: The kinesin-1 motor protein is regulated by a direct interaction of its head and tail. Authors: Kristen A Dietrich / Charles V Sindelar / Paul D Brewer / Kenneth H Downing / Christine R Cremo / Sarah E Rice / ![]() Abstract: Kinesin-1 is a molecular motor protein that transports cargo along microtubules. Inside cells, the vast majority of kinesin-1 is regulated to conserve ATP and to ensure its proper intracellular ...Kinesin-1 is a molecular motor protein that transports cargo along microtubules. Inside cells, the vast majority of kinesin-1 is regulated to conserve ATP and to ensure its proper intracellular distribution and coordination with other molecular motors. Regulated kinesin-1 folds in half at a hinge in its coiled-coil stalk. Interactions between coiled-coil regions near the enzymatically active heads at the N terminus and the regulatory tails at the C terminus bring these globular elements in proximity and stabilize the folded conformation. However, it has remained a mystery how kinesin-1's microtubule-stimulated ATPase activity is regulated in this folded conformation. Here, we present evidence for a direct interaction between the kinesin-1 head and tail. We photochemically cross-linked heads and tails and produced an 8-A cryoEM reconstruction of the cross-linked head-tail complex on microtubules. These data demonstrate that a conserved essential regulatory element in the kinesin-1 tail interacts directly and specifically with the enzymatically critical Switch I region of the head. This interaction suggests a mechanism for tail-mediated regulation of the ATPase activity of kinesin-1. In our structure, the tail makes simultaneous contacts with the kinesin-1 head and the microtubule, suggesting the tail may both regulate kinesin-1 in solution and hold it in a paused state with high ADP affinity on microtubules. The interaction of the Switch I region of the kinesin-1 head with the tail is strikingly similar to the interactions of small GTPases with their regulators, indicating that other kinesin motors may share similar regulatory mechanisms. | |||||||||
History |
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Structure visualization
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 15.5 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14.1 KB 14.1 KB | Display Display | ![]() |
Images | ![]() | 732.7 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 78.6 KB | Display | ![]() |
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Full document | ![]() | 77.8 KB | Display | |
Data in XML | ![]() | 492 B | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Map
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Annotation | null | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
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Sample components
-Entire : Monomeric kinesin-1 head domain crosslinked in trans to dimerized...
Entire | Name: Monomeric kinesin-1 head domain crosslinked in trans to dimerized kinesin-1 tail domain, bound to the microtubule |
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Components |
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-Supramolecule #1000: Monomeric kinesin-1 head domain crosslinked in trans to dimerized...
Supramolecule | Name: Monomeric kinesin-1 head domain crosslinked in trans to dimerized kinesin-1 tail domain, bound to the microtubule type: sample / ID: 1000 Oligomeric state: One head-tail complex binds to one tubulin alpha-beta dimer Number unique components: 3 |
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Molecular weight | Theoretical: 148 KDa |
-Macromolecule #1: microtubule
Macromolecule | Name: microtubule / type: protein_or_peptide / ID: 1 / Name.synonym: microtubule Details: 13-protofilament microtubules with an asymmetric seam were selected for image processing Oligomeric state: quasi-helical assembly / Recombinant expression: No / Database: NCBI |
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Source (natural) | Tissue: brain / Cell: cow / Location in cell: cytoplasm |
Molecular weight | Theoretical: 800 KDa |
Sequence | GO: tubulin complex / InterPro: Alpha tubulin, Beta tubulin |
-Macromolecule #2: kinesin tail domain
Macromolecule | Name: kinesin tail domain / type: protein_or_peptide / ID: 2 / Name.synonym: kinesin / Details: residues 823-944 of kinesin-1 / Oligomeric state: Dimer / Recombinant expression: Yes |
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Source (natural) | Cell: BL21 / Location in cell: cytoplasm |
Molecular weight | Theoretical: 13 KDa |
Recombinant expression | Organism: ![]() ![]() |
Sequence | GO: kinesin complex / InterPro: Kinesin motor domain |
-Macromolecule #3: human kinesin monomeric construct cys-lite K349
Macromolecule | Name: human kinesin monomeric construct cys-lite K349 / type: protein_or_peptide / ID: 3 / Name.synonym: kinesin / Oligomeric state: monomer / Recombinant expression: Yes |
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Source (natural) | Cell: BL21 / Location in cell: cytoplasm |
Molecular weight | Theoretical: 50 MDa |
Recombinant expression | Organism: ![]() ![]() |
Sequence | GO: kinesin complex / InterPro: Kinesin motor domain |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | helical reconstruction |
Aggregation state | filament |
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Sample preparation
Concentration | 1 mg/mL |
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Buffer | pH: 6.8 Details: 2.5 mM PIPES, 5 mM NaCl, 2 mM MgCl2, 1 mM EGTA, 5 mM Imidazole, 5 mM BME, and 40 uM ADP |
Grid | Details: 300 mesh copper grid with homemade holey carbon |
Vitrification | Cryogen name: ETHANE / Chamber temperature: 103 K / Instrument: HOMEMADE PLUNGER Details: Vitrification instrument: homemade. Vitrification carried out under ambient conditions Method: excess solution wicked away from grid before blotting and plunging immediately. Less than 0.5 seconds elapsed between blotting and plunging. |
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Electron microscopy
Microscope | JEOL 4000EX |
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Temperature | Min: 98 K / Max: 108 K / Average: 100 K |
Alignment procedure | Legacy - Astigmatism: objective lens astigmatism was approximately corrected at 400,000 times magnification |
Date | Sep 1, 2007 |
Image recording | Category: FILM / Film or detector model: KODAK SO-163 FILM / Digitization - Scanner: NIKON SUPER COOLSCAN 9000 / Digitization - Sampling interval: 6.3 µm / Number real images: 347 / Average electron dose: 16 e/Å2 / Bits/pixel: 16 |
Electron beam | Acceleration voltage: 400 kV / Electron source: LAB6 |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 4.1 mm / Nominal defocus max: 1.8 µm / Nominal defocus min: 0.7 µm / Nominal magnification: 60000 |
Sample stage | Specimen holder: Eucentric / Specimen holder model: GATAN LIQUID NITROGEN |
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Image processing
Final reconstruction | Algorithm: OTHER / Resolution.type: BY AUTHOR / Resolution: 8.0 Å / Resolution method: OTHER / Software - Name: SPIDER Details: image defocus and astigmatism were determined by ctffind3 |
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CTF correction | Details: Integrated with fourier inversion reconstruction in the manner of FREALIGN by a customized c program |
Final angle assignment | Details: SPIDER |
-Atomic model buiding 1
Initial model | PDB ID: |
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Software | Name: ![]() |
Details | Protocol: Rigid Body. the menu option Fit Model in Map from UCSF Chimera was used to generate the fit |
Refinement | Space: REAL / Protocol: RIGID BODY FIT / Target criteria: real-space density |
-Atomic model buiding 2
Initial model | PDB ID: |
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Software | Name: ![]() |
Details | Protocol: Rigid Body. the menu option Fit Model in Map from UCSF Chimera was used to generate the fit |
Refinement | Space: REAL / Protocol: RIGID BODY FIT / Target criteria: real-space density |