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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-30870 | |||||||||
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Title | Human bile salt exporter ABCB11 in complex with taurocholate | |||||||||
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![]() | ABC transporter / liver / MEMBRANE PROTEIN / TRANSLOCASE | |||||||||
Function / homology | ![]() canalicular bile acid transmembrane transporter activity / positive regulation of bile acid secretion / Defective ABCB11 causes PFIC2 and BRIC2 / canalicular bile acid transport / intracellular canaliculus / xenobiotic export from cell / regulation of fatty acid beta-oxidation / regulation of bile acid metabolic process / ABC-type bile acid transporter activity / bile acid transmembrane transporter activity ...canalicular bile acid transmembrane transporter activity / positive regulation of bile acid secretion / Defective ABCB11 causes PFIC2 and BRIC2 / canalicular bile acid transport / intracellular canaliculus / xenobiotic export from cell / regulation of fatty acid beta-oxidation / regulation of bile acid metabolic process / ABC-type bile acid transporter activity / bile acid transmembrane transporter activity / ABC-type oligopeptide transporter activity / bile acid biosynthetic process / xenobiotic transmembrane transport / phospholipid homeostasis / intercellular canaliculus / bile acid metabolic process / bile acid and bile salt transport / ABC-type xenobiotic transporter activity / Translocases; Catalysing the translocation of other compounds; Linked to the hydrolysis of a nucleoside triphosphate / bile acid signaling pathway / lipid homeostasis / carbohydrate transmembrane transporter activity / Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol / Recycling of bile acids and salts / xenobiotic metabolic process / fatty acid metabolic process / cholesterol homeostasis / response to organic cyclic compound / recycling endosome / transmembrane transport / response to estrogen / recycling endosome membrane / response to ethanol / response to oxidative stress / protein ubiquitination / endosome / apical plasma membrane / Golgi membrane / cell surface / ATP hydrolysis activity / extracellular exosome / ATP binding / plasma membrane Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.7 Å | |||||||||
![]() | Wang L / How WT | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structures of human bile acid exporter ABCB11 reveal a transport mechanism facilitated by two tandem substrate-binding pockets. Authors: Liang Wang / Wen-Tao Hou / Jie Wang / Da Xu / Cong Guo / Linfeng Sun / Ke Ruan / Cong-Zhao Zhou / Yuxing Chen / ![]() | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 28.3 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 11.2 KB 11.2 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 7.2 KB | Display | ![]() |
Images | ![]() | 50.4 KB | ||
Filedesc metadata | ![]() | 5.9 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 591.5 KB | Display | ![]() |
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Full document | ![]() | 591 KB | Display | |
Data in XML | ![]() | 9.5 KB | Display | |
Data in CIF | ![]() | 12.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7dv5MC ![]() 7e1aC M: atomic model generated by this map C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Voxel size | X=Y=Z: 1.01 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
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Sample components
-Entire : human ABCB11 in complex with taurocholate
Entire | Name: human ABCB11 in complex with taurocholate |
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Components |
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-Supramolecule #1: human ABCB11 in complex with taurocholate
Supramolecule | Name: human ABCB11 in complex with taurocholate / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 146 kDa/nm |
-Macromolecule #1: Bile salt export pump
Macromolecule | Name: Bile salt export pump / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO EC number: Translocases; Catalysing the translocation of other compounds; Linked to the hydrolysis of a nucleoside triphosphate |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 140.872219 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: GFFQLFRFSS STDIWLMFVG SLCAFLHGIA QPGVLLIFGT MTDVFIDYDV ELQELQIPGK ACVNNTIVWT NSSLNQNMTN GTRCGLLNI ESEMIKFASY YAGIAVAVLI TGYIQICFWV IAAARQIQKM RKFYFRRIMR MEIGWFDCNS VGELNTRFSD D INKINDAI ...String: GFFQLFRFSS STDIWLMFVG SLCAFLHGIA QPGVLLIFGT MTDVFIDYDV ELQELQIPGK ACVNNTIVWT NSSLNQNMTN GTRCGLLNI ESEMIKFASY YAGIAVAVLI TGYIQICFWV IAAARQIQKM RKFYFRRIMR MEIGWFDCNS VGELNTRFSD D INKINDAI ADQMALFIQR MTSTICGFLL GFFRGWKLTL VIISVSPLIG IGAATIGLSV SKFTDYELKA YAKAGVVADE VI SSMRTVA AFGGEKREVE RYEKNLVFAQ RWGIRKGIVM GFFTGFVWCL IFLCYALAFW YGSTLVLDEG EYTPGTLVQI FLS VIVGAL NLGNASPCLE AFATGRAAAT SIFETIDRKP IIDCMSEDGY KLDRIKGEIE FHNVTFHYPS RPEVKILNDL NMVI KPGEM TALVGPSGAG KSTALQLIQR FYDPCEGMVT VDGHDIRSLN IQWLRDQIGI VEQEPVLFST TIAENIRYGR EDATM EDIV QAAKEANAYN FIMDLPQQFD TLVGEGGGQM SGGQKQRVAI ARALIRNPKI LLLDMATSAL DNESEAMVQE VLSKIQ HGH TIISVAHRLS TVRAADTIIG FEHGTAVERG THEELLERKG VYFTLVTLQS QGNQALNEED IKDATEDDML ARTFSRG SY QDSLRASIRQ RSKSQLSYLV HEPPLAVVDH KSTYEEDRKD KDIPVQEEVE PAPVRRILKF SAPEWPYMLV GSVGAAVN G TVTPLYAFLF SQILGTFSIP DKEEQRSQIN GVCLLFVAMG CVSLFTQFLQ GYAFAKSGEL LTKRLRKFGF RAMLGQDIA WFDDLRNSPG ALTTRLATDA SQVQGAAGSQ IGMIVNSFTN VTVAMIIAFS FSWKLSLVIL CFFPFLALSG ATQTRMLTGF ASRDKQALE MVGQITNEAL SNIRTVAGIG KERRFIEALE TELEKPFKTA IQKANIYGFC FAFAQCIMFI ANSASYRYGG Y LISNEGLH FSYVFRVISA VVLSATALGR AFSYTPSYAK AKISAARFFQ LLDRQPPISV YNTAGEKWDN FQGKIDFVDC KF TYPSRPD SQVLNGLSVS ISPGQTLAFV GSSGCGKSTS IQLLERFYDP DQGKVMIDGH DSKKVNVQFL RSNIGIVSQE PVL FACSIM DNIKYGDNTK EIPMERVIAA AKQAQLHDFV MSLPEKYETN VGSQGSQLSR GEKQRIAIAR AIVRDPKILL LDEA TSALD TESEKTVQVA LDKAREGRTC IVIAHRLSTI QNADIIAVMA QGVVIEKGTH EELMAQKGAY YKLVT UniProtKB: Bile salt export pump |
-Macromolecule #2: TAUROCHOLIC ACID
Macromolecule | Name: TAUROCHOLIC ACID / type: ligand / ID: 2 / Number of copies: 2 / Formula: TCH |
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Molecular weight | Theoretical: 515.703 Da |
Chemical component information | ![]() ChemComp-TCH: |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Concentration | 5.8 mg/mL |
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Buffer | pH: 8 |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 8 K |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 60.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: SPOT SCAN / Imaging mode: BRIGHT FIELD |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |