+
データを開く
-
基本情報
登録情報 | ![]() | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
タイトル | Composite structure of Dynein-Dynactin-JIP3-LIS1 | ||||||||||||
![]() | Composite map of Dynein-Dynactin-JIP3-LIS1 filtered to 10 angstrom resolution | ||||||||||||
![]() |
| ||||||||||||
![]() | Dynein / AAA-Atpase / p150 / LIS1 / MOTOR PROTEIN / Dynactin / JIP3 | ||||||||||||
機能・相同性 | ![]() RHOD GTPase cycle / Factors involved in megakaryocyte development and platelet production / Regulation of actin dynamics for phagocytic cup formation / EPHB-mediated forward signaling / Adherens junctions interactions / VEGFA-VEGFR2 Pathway / Cell-extracellular matrix interactions / RHO GTPases Activate WASPs and WAVEs / MAP2K and MAPK activation / intracellular transport of viral protein in host cell ...RHOD GTPase cycle / Factors involved in megakaryocyte development and platelet production / Regulation of actin dynamics for phagocytic cup formation / EPHB-mediated forward signaling / Adherens junctions interactions / VEGFA-VEGFR2 Pathway / Cell-extracellular matrix interactions / RHO GTPases Activate WASPs and WAVEs / MAP2K and MAPK activation / intracellular transport of viral protein in host cell / retrograde axonal transport of mitochondrion / UCH proteinases / corpus callosum morphogenesis / secretory vesicle / Gap junction degradation / Formation of annular gap junctions / RHOF GTPase cycle / nitric-oxide synthase inhibitor activity / microtubule cytoskeleton organization involved in establishment of planar polarity / Clathrin-mediated endocytosis / Formation of the dystrophin-glycoprotein complex (DGC) / ameboidal-type cell migration / establishment of planar polarity of embryonic epithelium / centriolar subdistal appendage / positive regulation of neuromuscular junction development / Regulation of PLK1 Activity at G2/M Transition / Loss of Nlp from mitotic centrosomes / Loss of proteins required for interphase microtubule organization from the centrosome / Anchoring of the basal body to the plasma membrane / AURKA Activation by TPX2 / dynactin complex / 1-alkyl-2-acetylglycerophosphocholine esterase complex / deoxyribonuclease inhibitor activity / negative regulation of DNA strand resection involved in replication fork processing / centriole-centriole cohesion / Recruitment of mitotic centrosome proteins and complexes / maintenance of centrosome location / negative regulation of phosphorylation / microtubule anchoring at centrosome / F-actin capping protein complex / platelet activating factor metabolic process / WASH complex / transport along microtubule / intraciliary retrograde transport / visual behavior / radial glia-guided pyramidal neuron migration / acrosome assembly / central region of growth cone / cerebral cortex neuron differentiation / ventral spinal cord development / dynein light chain binding / establishment of centrosome localization / microtubule sliding / positive regulation of embryonic development / anterograde axonal protein transport / dynein heavy chain binding / positive regulation of cytokine-mediated signaling pathway / motile cilium assembly / Activation of BIM and translocation to mitochondria / microtubule organizing center organization / interneuron migration / retromer complex / cytoskeleton-dependent cytokinesis / layer formation in cerebral cortex / cellular response to cytochalasin B / ciliary tip / microtubule plus-end / auditory receptor cell development / nuclear membrane disassembly / astral microtubule / regulation of transepithelial transport / Intraflagellar transport / MAP-kinase scaffold activity / positive regulation of microtubule nucleation / morphogenesis of a polarized epithelium / positive regulation of dendritic spine morphogenesis / structural constituent of postsynaptic actin cytoskeleton / cortical microtubule organization / positive regulation of intracellular transport / negative regulation of nitric oxide biosynthetic process / protein localization to adherens junction / myeloid leukocyte migration / reelin-mediated signaling pathway / melanosome transport / dense body / regulation of metaphase plate congression / postsynaptic actin cytoskeleton / barbed-end actin filament capping / establishment of spindle localization / Tat protein binding / Neutrophil degranulation / positive regulation of spindle assembly / JUN kinase binding / regulation of G protein-coupled receptor signaling pathway / stereocilium / osteoclast development / coronary vasculature development / non-motile cilium assembly / microtubule plus-end binding / brain morphogenesis 類似検索 - 分子機能 | ||||||||||||
生物種 | ![]() ![]() ![]() | ||||||||||||
手法 | 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 10.0 Å | ||||||||||||
![]() | Singh K / Lau CK / Manigrasso G / Gassmann R / Carter AP | ||||||||||||
資金援助 | ![]()
| ||||||||||||
![]() | ![]() タイトル: Molecular mechanism of dynein-dynactin complex assembly by LIS1. 著者: Kashish Singh / Clinton K Lau / Giulia Manigrasso / José B Gama / Reto Gassmann / Andrew P Carter / ![]() ![]() 要旨: Cytoplasmic dynein is a microtubule motor vital for cellular organization and division. It functions as a ~4-megadalton complex containing its cofactor dynactin and a cargo-specific coiled-coil ...Cytoplasmic dynein is a microtubule motor vital for cellular organization and division. It functions as a ~4-megadalton complex containing its cofactor dynactin and a cargo-specific coiled-coil adaptor. However, how dynein and dynactin recognize diverse adaptors, how they interact with each other during complex formation, and the role of critical regulators such as lissencephaly-1 (LIS1) protein (LIS1) remain unclear. In this study, we determined the cryo-electron microscopy structure of dynein-dynactin on microtubules with LIS1 and the lysosomal adaptor JIP3. This structure reveals the molecular basis of interactions occurring during dynein activation. We show how JIP3 activates dynein despite its atypical architecture. Unexpectedly, LIS1 binds dynactin's p150 subunit, tethering it along the length of dynein. Our data suggest that LIS1 and p150 constrain dynein-dynactin to ensure efficient complex formation. | ||||||||||||
履歴 |
|
-
構造の表示
添付画像 |
---|
-
ダウンロードとリンク
-EMDBアーカイブ
マップデータ | ![]() | 917.7 MB | ![]() | |
---|---|---|---|---|
ヘッダ (付随情報) | ![]() ![]() | 45.2 KB 45.2 KB | 表示 表示 | ![]() |
画像 | ![]() | 45.7 KB | ||
Filedesc metadata | ![]() | 14.5 KB | ||
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-検証レポート
文書・要旨 | ![]() | 457.2 KB | 表示 | ![]() |
---|---|---|---|---|
文書・詳細版 | ![]() | 456.8 KB | 表示 | |
XML形式データ | ![]() | 8.6 KB | 表示 | |
CIF形式データ | ![]() | 10 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
関連構造データ | ![]() 8ptkMC ![]() 8pqvC ![]() 8pqwC ![]() 8pqyC ![]() 8pqzC ![]() 8pr0C ![]() 8pr1C ![]() 8pr2C ![]() 8pr3C ![]() 8pr4C ![]() 8pr5C C: 同じ文献を引用 ( M: このマップから作成された原子モデル |
---|---|
類似構造データ | 類似検索 - 機能・相同性 ![]() |
-
リンク
EMDBのページ | ![]() ![]() |
---|---|
「今月の分子」の関連する項目 |
-
マップ
ファイル | ![]() | ||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
注釈 | Composite map of Dynein-Dynactin-JIP3-LIS1 filtered to 10 angstrom resolution | ||||||||||||||||||||||||||||||||||||
投影像・断面図 | 画像のコントロール
画像は Spider により作成 | ||||||||||||||||||||||||||||||||||||
ボクセルのサイズ | X=Y=Z: 1.059 Å | ||||||||||||||||||||||||||||||||||||
密度 |
| ||||||||||||||||||||||||||||||||||||
対称性 | 空間群: 1 | ||||||||||||||||||||||||||||||||||||
詳細 | EMDB XML:
|
-添付データ
-
試料の構成要素
+全体 : Composite structure of Dynein-Dynactin-JIP3-LIS1
+超分子 #1: Composite structure of Dynein-Dynactin-JIP3-LIS1
+超分子 #2: Dynactin subunits
+超分子 #3: Dynein and JIP3
+分子 #1: Platelet-activating factor acetylhydrolase IB subunit beta
+分子 #2: ARP1 actin related protein 1 homolog A
+分子 #3: Actin, cytoplasmic 1
+分子 #4: Arp11
+分子 #5: Capping protein (Actin filament) muscle Z-line, alpha 1
+分子 #6: F-actin-capping protein subunit beta
+分子 #7: Dynactin subunit 2
+分子 #8: Dynactin subunit 3
+分子 #9: Dynactin subunit 1
+分子 #10: Dynactin 6
+分子 #11: Dynactin subunit 5
+分子 #12: C-Jun-amino-terminal kinase-interacting protein 3
+分子 #13: Dynactin subunit 4
+分子 #14: Dynein light chain 1, cytoplasmic
+分子 #15: Cytoplasmic dynein 1 heavy chain 1
+分子 #16: Cytoplasmic dynein 1 intermediate chain 2
+分子 #17: Cytoplasmic dynein 1 light intermediate chain 2
+分子 #18: Dynein light chain Tctex-type 1
+分子 #19: Dynein light chain roadblock-type 1
+分子 #20: ADENOSINE-5'-DIPHOSPHATE
+分子 #21: ADENOSINE-5'-TRIPHOSPHATE
+分子 #22: ZINC ION
+分子 #23: MAGNESIUM ION
+分子 #24: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
-実験情報
-構造解析
手法 | クライオ電子顕微鏡法 |
---|---|
![]() | 単粒子再構成法 |
試料の集合状態 | particle |
-
試料調製
緩衝液 | pH: 7.2 |
---|---|
凍結 | 凍結剤: ETHANE |
-
電子顕微鏡法
顕微鏡 | FEI TITAN KRIOS |
---|---|
撮影 | フィルム・検出器のモデル: GATAN K3 BIOQUANTUM (6k x 4k) 平均電子線量: 53.0 e/Å2 |
電子線 | 加速電圧: 300 kV / 電子線源: ![]() |
電子光学系 | 照射モード: FLOOD BEAM / 撮影モード: BRIGHT FIELD / 最大 デフォーカス(公称値): 4.0 µm / 最小 デフォーカス(公称値): 0.5 µm |
実験機器 | ![]() モデル: Titan Krios / 画像提供: FEI Company |
-
画像解析
初期モデル | モデルのタイプ: INSILICO MODEL |
---|---|
最終 再構成 | 解像度のタイプ: BY AUTHOR / 解像度: 10.0 Å / 解像度の算出法: OTHER / 使用した粒子像数: 700290 |
初期 角度割当 | タイプ: ANGULAR RECONSTITUTION |
最終 角度割当 | タイプ: ANGULAR RECONSTITUTION |