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- SASDEC9: Flagellar brake protein YcgR in complex with c-di-GMP from Escher... -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEC9
SampleFlagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli
  • Flagellar brake protein YcgR in complex with c-di-GMP (protein), YcgR-c-di-GMP, Escherichia coli (strain K12)
Function / homology
Function and homology information


regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed / negative regulation of bacterial-type flagellum-dependent cell motility / bacterial-type flagellum basal body / cyclic-di-GMP binding / bacterial-type flagellum-dependent cell motility
Similarity search - Function
Type III secretion system flagellar brake protein YcgR / Flagellar regulator YcgR, PilZN domain / Type III secretion system flagellar brake protein YcgR, PilZN domain / PilZ domain / PilZ domain / FMN-binding split barrel
Similarity search - Domain/homology
Flagellar brake protein YcgR
Similarity search - Component
Biological speciesEscherichia coli (strain K12) (bacteria)
Contact author
  • Yanjie Hou (Institute of Biophysics, Chinese Academy of Sciences)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #2731
Type: dummy / Radius of dummy atoms: 2.60 A / Chi-square value: 0.841 / P-value: 0.000320
Search similar-shape structures of this assembly by Omokage search (details)
Model #2733
Type: atomic / Chi-square value: 1.231
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Flagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli
Specimen concentration: 0.60-4.80
BufferName: 20 mM HEPES, 150mM NaCl, 10% glycerol, / pH: 7.5
Entity #1418Name: YcgR-c-di-GMP / Type: protein
Description: Flagellar brake protein YcgR in complex with c-di-GMP
Formula weight: 29.376 / Num. of mol.: 1 / Source: Escherichia coli (strain K12) / References: UniProt: P76010
Sequence: MSHYHEQFLK QNPLAVLGVL RDLHKAAIPL RLSWNGGQLI SKLLAITPDK LVLDFGSQAE DNIAVLKAQH ITITAETQGA KVEFTVEQLQ QSEYLQLPAF ITVPPPTLWF VQRRRYFRIS APLHPPYFCQ TKLADNSTLR FRLYDLSLGG MGALLETAKP AELQEGMRFA ...Sequence:
MSHYHEQFLK QNPLAVLGVL RDLHKAAIPL RLSWNGGQLI SKLLAITPDK LVLDFGSQAE DNIAVLKAQH ITITAETQGA KVEFTVEQLQ QSEYLQLPAF ITVPPPTLWF VQRRRYFRIS APLHPPYFCQ TKLADNSTLR FRLYDLSLGG MGALLETAKP AELQEGMRFA QIEVNMGQWG VFHFDAQLIS ISERKVIDGK NETITTPRLS FRFLNVSPTV ERQLQRIIFS LEREAREKAD KVRDKLAAAL EHHHHHH

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Experimental information

BeamInstrument name: Shanghai Synchrotron Radiation Facility (SSRF) BL19U2
City: Shanghai / 国: China / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.103 Å
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: Flagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli
Measurement date: Jan 4, 2016 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.0128 0.4546
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 690 /
MinMax
Q0.0177877 0.357764
P(R) point1 690
R0 72.5
Result
Type of curve: merged /
ExperimentalPorod
MW28 kDa27.6 kDa
Volume-44.15 nm3

P(R)GuinierGuinier error
Forward scattering, I02780 2755.43 10.9
Radius of gyration, Rg2.25 nm2.19 nm0.06

MinMax
D-7.25
Guinier point11 92

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