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- SASDDF7: Armless mitochondrial tRNA-Arg from Romanomermis culicivorax -

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Basic information

Entry
Database: SASBDB / ID: SASDDF7
SampleArmless mitochondrial tRNA-Arg from Romanomermis culicivorax
  • Arginyl transfer RNA (RNA), tRNA-Arg, Romanomermis culicivorax
Biological speciesRomanomermis culicivorax (invertebrata)
CitationDate: 2018 Jul 9
Title: Small but large enough: structural properties of armless mitochondrial tRNAs from the nematode Romanomermis culicivorax
Authors: Jühling T / Duchardt-Ferner E / Bonin S / Wöhnert J / Pütz J / Florentz C / Betat H / Sauter C
Contact author
  • Claude Sauter (IBMC - CNRS)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #2041
Type: atomic / Chi-square value: 1.955 / P-value: 0.000020
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Armless mitochondrial tRNA-Arg from Romanomermis culicivorax
BufferName: 50 mM HEPES-NaOH 10 mM MgCl2 / pH: 7.4
Entity #1090Name: tRNA-Arg / Type: RNA / Description: Arginyl transfer RNA / Formula weight: 13.39 / Num. of mol.: 1 / Source: Romanomermis culicivorax
Sequence:
AAACUUUUAG CAGGAUUUCG AAUCCUAAUU UAUAUAAGUU UU

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2.8 mm
DetectorName: AVIEX PCCD170170 / Type: CCD
Scan
Title: Armless mitochondrial tRNA-Arg from Romanomermis culicivorax
Measurement date: Dec 16, 2015 / Storage temperature: 4 °C / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 240 / Unit: 1/A /
MinMax
Q0.0062 0.6083
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 414 /
MinMax
Q0.0159026 0.250307
P(R) point1 414
R0 67
Result
Type of curve: sec /
ExperimentalPorod
MW14.1 kDa-
Volume-20.2 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.01015 1.0E-5 0.01017 4.0E-5
Radius of gyration, Rg2.08 nm0.003 2.07 nm0.03

MinMax
D-6.7
Guinier point27 56

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