+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDDD8 |
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Sample | class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III
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Function / homology | Function and homology information : / exodeoxyribonuclease III / endonuclease activity / DNA repair / DNA binding Similarity search - Function |
Biological species | Mycobacterium tuberculosis (bacteria) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDDD8 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2079 | Type: dummy / Radius of dummy atoms: 2.00 A / Symmetry: P1 / Chi-square value: 1.361 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III Specimen concentration: 5.3 mg/ml |
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Buffer | Name: 50 mM Tris-HCl 500 mM NaCl 5mM β-mercaptoethanol / pH: 8 |
Entity #1089 | Type: protein / Description: Probable exodeoxyribonuclease III protein XthA / Formula weight: 32.108 / Num. of mol.: 1 / Source: Mycobacterium tuberculosis / References: UniProt: A0A0T9L251 Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD ...Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD PAAPIALMGD WNIAPTDDDV WSTEFFAGCT HVSEPERKAF NAIVDAQFTD VVRPFTPGPG VYTYWDYTQL RFPKKQGMRI DFILGSPALA ARVMDAQIVR EERKGKAPSD HAPVLVDLHA G |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.082 Å / Dist. spec. to detc.: 1.1 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III Measurement date: May 12, 2017 / Storage temperature: 4 °C / Cell temperature: 10 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 840 /
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Result | Type of curve: single_conc Comments: CAUTION! The SAXS data at very-low angles (s < 0.21 nm-1) have error estimates and intensities that are unrealistic for a single-concentration SAXS profile and are inconsistent with the remaining dataset.
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