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- SASDBQ4: Neisseria meningitidis iron-regulated FrpD-FrpC lipoprotein/prote... -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDBQ4
SampleNeisseria meningitidis iron-regulated FrpD-FrpC lipoprotein/protein complex
  • Iron-regulated outer membrane lipoprotein FrpD (protein), FrpD, Neisseria meningitidis
  • Iron-regulated protein FrpC (protein), FrpC, Neisseria meningitidis
Function / homology
Function and homology information


cell outer membrane / toxin activity / calcium ion binding / extracellular region
Similarity search - Function
RTX iron-regulated FrpC / RTX iron-regulated protein FrpC / RTX toxin determinant A / Haemolysin-type calcium binding-related / Haemolysin-type calcium binding protein related domain / : / Hemolysin-type calcium-binding conserved site / Hemolysin-type calcium-binding region signature. / RTX calcium-binding nonapeptide repeat / RTX calcium-binding nonapeptide repeat (4 copies) ...RTX iron-regulated FrpC / RTX iron-regulated protein FrpC / RTX toxin determinant A / Haemolysin-type calcium binding-related / Haemolysin-type calcium binding protein related domain / : / Hemolysin-type calcium-binding conserved site / Hemolysin-type calcium-binding region signature. / RTX calcium-binding nonapeptide repeat / RTX calcium-binding nonapeptide repeat (4 copies) / Serralysin-like metalloprotease, C-terminal / Prokaryotic membrane lipoprotein lipid attachment site profile.
Similarity search - Domain/homology
RTX iron-regulated protein (frpC) / Iron-regulated protein FrpC
Similarity search - Component
Biological speciesNeisseria meningitidis (bacteria)
CitationDate: 2017 Jan 13
Title: Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitidis
Authors: Sviridova E / Rezacova P / Bondar A / Veverka V / Novak P / Schenk G / Svergun D / Kuta Smatanova I
Contact author
  • Gundolf Schenk (Stanford University, Stanford, California, USA)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #523
Type: dummy / Software: DAMMIN / Radius of dummy atoms: 3.00 A / Chi-square value: 1.317904 / P-value: 0.029000
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Neisseria meningitidis iron-regulated FrpD-FrpC lipoprotein/protein complex
Specimen concentration: 0.75-4.90 / Entity id: 337 / 338
BufferName: Tris-HCl / Concentration: 50 mg/ml / pH: 7.4 / Composition: 150 mM NaCl, 0.01% NaN3
Entity #337Name: FrpD / Type: protein / Description: Iron-regulated outer membrane lipoprotein FrpD / Formula weight: 26.756 / Num. of mol.: 1 / Source: Neisseria meningitidis / References: UniProt: Q08840
Sequence: keqtsfnnpe pmtgfehtvt fdfqgtkmvi pygylarytq dnatkwlsdt pgqdaysinl ieisvyykkt dqgwvlepyn qqnkahfiqf lrdgldsvdd ivirkdacsl sttmgerllt ygvkkmpsay peyeayedkr hipenpyfhe fyyikkgenp aiithrnnri ...Sequence:
keqtsfnnpe pmtgfehtvt fdfqgtkmvi pygylarytq dnatkwlsdt pgqdaysinl ieisvyykkt dqgwvlepyn qqnkahfiqf lrdgldsvdd ivirkdacsl sttmgerllt ygvkkmpsay peyeayedkr hipenpyfhe fyyikkgenp aiithrnnri nqteedsyst svgscingft vqyypfirek qqltqqelvg yhqqveqlvq sfvnnsnkk
Entity #338Name: FrpC / Type: protein / Description: Iron-regulated protein FrpC / Formula weight: 46.402 / Num. of mol.: 1 / Source: Neisseria meningitidis / References: UniProt: Q9JYV5
Sequence: mnegevvltp eqiqtlrgya srgdtyggwr ylanlgdrya ddaaaivgkd anlnglnlwm kkgvenlwdd tvgkktrlek fdrvalqhfr qyarlinqnn grlpntseie rsyykavtdn gvsssaaidl vinrslpdma dgywalglgi eaerihneqa vnnpngserd ...Sequence:
mnegevvltp eqiqtlrgya srgdtyggwr ylanlgdrya ddaaaivgkd anlnglnlwm kkgvenlwdd tvgkktrlek fdrvalqhfr qyarlinqnn grlpntseie rsyykavtdn gvsssaaidl vinrslpdma dgywalglgi eaerihneqa vnnpngserd nrkqlisald kgfdgsfkek hftflqsvmm dvtklgveyt idgwqkiggw gngiindlyk svvkrewtgi feivnnnikq gneafknein slvhdmkaag kefgddlntq wnnltqaaei iyndivdnts qgiekgvkai kelsekmkna asdladgsae kakqvvedla qaakeayena kstaekaaqa areffkglps fkdlaekfrd lfpnpegwid dghqclapwv ketkkrngky hvyd

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Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Title: FrpD-FrpC complex from Neisseria meningitidis / Measurement date: Oct 19, 2011 / Storage temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0855 6.032
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 499 /
MinMax
Q0.18 2.911
P(R) point35 533
R0 13.49
Result
Type of curve: merged /
ExperimentalPorod
MW40 kDa74 kDa
Volume-123 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I050.7 0.15 50.3 0.4
Radius of gyration, Rg3.86 nm0.01 3.72 nm0.4

MinMax
D-13.5
Guinier point35 97

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