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- SASDB73: Human dystrophin central domain repeats 4 to 9 (Dystrophin centra... -

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Basic information

Entry
Database: SASBDB / ID: SASDB73
SampleHuman dystrophin central domain repeats 4 to 9
  • Dystrophin central domain repeats 4 to 9 (protein), Dystrophin 718-1368, Homo sapiens
Function / homology
Function and homology information


regulation of muscle system process / regulation of cellular response to growth factor stimulus / regulation of skeletal muscle contraction / syntrophin complex / synaptic signaling / regulation of voltage-gated calcium channel activity / negative regulation of peptidyl-cysteine S-nitrosylation / cardiac muscle cell action potential / positive regulation of sodium ion transmembrane transporter activity / dystrophin-associated glycoprotein complex ...regulation of muscle system process / regulation of cellular response to growth factor stimulus / regulation of skeletal muscle contraction / syntrophin complex / synaptic signaling / regulation of voltage-gated calcium channel activity / negative regulation of peptidyl-cysteine S-nitrosylation / cardiac muscle cell action potential / positive regulation of sodium ion transmembrane transporter activity / dystrophin-associated glycoprotein complex / cell-substrate junction / motile cilium assembly / peptide biosynthetic process / dystroglycan binding / regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion / vinculin binding / muscle cell development / costamere / neuron projection terminus / Striated Muscle Contraction / filopodium membrane / structural constituent of muscle / muscle organ development / myosin binding / muscle cell cellular homeostasis / maintenance of blood-brain barrier / nitric-oxide synthase binding / negative regulation of peptidyl-serine phosphorylation / Non-integrin membrane-ECM interactions / regulation of ryanodine-sensitive calcium-release channel activity / regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion / neuron development / cardiac muscle contraction / regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum / skeletal muscle tissue development / response to muscle stretch / positive regulation of neuron differentiation / regulation of heart rate / filopodium / sarcolemma / structural constituent of cytoskeleton / positive regulation of neuron projection development / Z disc / protein localization / actin binding / protein-containing complex assembly / postsynaptic membrane / cytoskeleton / membrane raft / synapse / cell surface / protein-containing complex / zinc ion binding / nucleus / plasma membrane / cytosol
Similarity search - Function
Dystrophin/utrophin / EF-hand domain, type 1 / EF-hand domain, type 2 / : / EF hand / EF-hand / Spectrin repeat / Spectrin repeat / Spectrin/alpha-actinin / Spectrin repeats ...Dystrophin/utrophin / EF-hand domain, type 1 / EF-hand domain, type 2 / : / EF hand / EF-hand / Spectrin repeat / Spectrin repeat / Spectrin/alpha-actinin / Spectrin repeats / Actinin-type actin-binding domain signature 1. / Actinin-type actin-binding domain signature 2. / Actinin-type actin-binding domain, conserved site / Calponin homology domain / Zinc finger ZZ-type signature. / Zinc-binding domain, present in Dystrophin, CREB-binding protein. / Zinc finger, ZZ type / Calponin homology (CH) domain / Zinc finger, ZZ-type / Zinc finger, ZZ-type superfamily / Zinc finger ZZ-type profile. / Calponin homology domain / CH domain superfamily / Calponin homology (CH) domain profile. / WW domain / WW/rsp5/WWP domain signature. / WW domain superfamily / WW/rsp5/WWP domain profile. / Domain with 2 conserved Trp (W) residues / WW domain / EF-hand domain pair
Similarity search - Domain/homology
Biological speciesHomo sapiens (human)
CitationJournal: J Biol Chem / Year: 2018
Title: Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions.
Authors: Olivier Delalande / Anne-Elisabeth Molza / Raphael Dos Santos Morais / Angélique Chéron / Émeline Pollet / Céline Raguenes-Nicol / Christophe Tascon / Emmanuel Giudice / Marine Guilbaud ...Authors: Olivier Delalande / Anne-Elisabeth Molza / Raphael Dos Santos Morais / Angélique Chéron / Émeline Pollet / Céline Raguenes-Nicol / Christophe Tascon / Emmanuel Giudice / Marine Guilbaud / Aurélie Nicolas / Arnaud Bondon / France Leturcq / Nicolas Férey / Marc Baaden / Javier Perez / Pierre Roblin / France Piétri-Rouxel / Jean-François Hubert / Mirjam Czjzek / Elisabeth Le Rumeur /
Abstract: Dystrophin, encoded by the gene, is critical for maintaining plasma membrane integrity during muscle contraction events. Mutations in the gene disrupting the reading frame prevent dystrophin ...Dystrophin, encoded by the gene, is critical for maintaining plasma membrane integrity during muscle contraction events. Mutations in the gene disrupting the reading frame prevent dystrophin production and result in severe Duchenne muscular dystrophy (DMD); in-frame internal deletions allow production of partly functional internally deleted dystrophin and result in less severe Becker muscular dystrophy (BMD). Many known BMD deletions occur in dystrophin's central domain, generally considered to be a monotonous rod-shaped domain based on the knowledge of spectrin family proteins. However, the effects caused by these deletions, ranging from asymptomatic to severe BMD, argue against the central domain serving only as a featureless scaffold. We undertook structural studies combining small-angle X-ray scattering and molecular modeling in an effort to uncover the structure of the central domain, as dystrophin has been refractory to characterization. We show that this domain appears to be a tortuous and complex filament that is profoundly disorganized by the most severe BMD deletion (loss of exons 45-47). Despite the preservation of large parts of the binding site for neuronal nitric oxide synthase (nNOS) in this deletion, computational approaches failed to recreate the association of dystrophin with nNOS. This observation is in agreement with a strong decrease of nNOS immunolocalization in muscle biopsies, a parameter related to the severity of BMD phenotypes. The structural description of the whole dystrophin central domain we present here is a first necessary step to improve the design of microdystrophin constructs toward the goal of a successful gene therapy for DMD.
Contact author
  • Elisabeth Le Rumeur (Université de Rennes 1, Institut Génétique et Développement de Rennes, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #436
Type: atomic / Radius of dummy atoms: 1.90 A / Chi-square value: 58.476609
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Human dystrophin central domain repeats 4 to 9
BufferName: 20 mM Tris 150 mM NaCl 1 mM EDTA 2% glycerol / Concentration: 20.00 mM / pH: 7.5 / Composition: 150 mM NaCl, 1 mM EDTA, 2% glycerol
Entity #287Name: Dystrophin 718-1368 / Type: protein / Description: Dystrophin central domain repeats 4 to 9 / Formula weight: 76.045 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: P11532
Sequence: GSSEIRKRLD VDITELHSWI TRSEAVLQSP EFAIFRKEGN FSDLKEKVNA IEREKAEKFR KLQDASRSAQ ALVEQMVNEG VNADSIKQAS EQLNSRWIEF CQLLSERLNW LEYQNNIIAF YNQLQQLEQM TTTAENWLKI QPTTPSEPTA IKSQLKICKD EVNRLSGLQP ...Sequence:
GSSEIRKRLD VDITELHSWI TRSEAVLQSP EFAIFRKEGN FSDLKEKVNA IEREKAEKFR KLQDASRSAQ ALVEQMVNEG VNADSIKQAS EQLNSRWIEF CQLLSERLNW LEYQNNIIAF YNQLQQLEQM TTTAENWLKI QPTTPSEPTA IKSQLKICKD EVNRLSGLQP QIERLKIQSI ALKEKGQGPM FLDADFVAFT NHFKQVFSDV QAREKELQTI FDTLPPMRYQ ETMSAIRTWV QQSETKLSIP QLSVTDYEIM EQRLGELQAL QSSLQEQQSG LYYLSTTVKE MSKKAPSEIS RKYQSEFEEI EGRWKKLSSQ LVEHCQKLEE QMNKLRKIQN HIQTLKKWMA EVDVFLKEEW PALGDSEILK KQLKQCRLLV SDIQTIQPSL NSVNEGGQKI KNEAEPEFAS RLETELKELN TQWDHMCQQV YARKEALKGG LEKTVSLQKD LSEMHEWMTQ AEEEYLERDF EYKTPDELQK AVEEMKRAKE EAQQKEAKVK LLTESVNSVI AQAPPVAQEA LKKELETLTT NYQWLCTRLN GKCKTLEEVW ACWHELLSYL EKANKWLNEV EFKLKTTENI PGGAEEISEV LDSLENLMRH SEDNPNQIRI LAQTLTDGGV MDELINEELE TFNSRWRELH EEAVRRQKLL EQS

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / : France / Type of source: X-ray synchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 1.82 mm
DetectorName: AVIEX / Type: CCD
Scan
Title: Human dystrophin central domain repeats 4 to 9 / Measurement date: Sep 19, 2012 / Storage temperature: 15 °C / Exposure time: 1.5 sec. / Number of frames: 33 / Unit: 1/nm /
MinMax
Q0.0625 6.0734
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 501 /
MinMax
Q0.008522 0.2923
P(R) point5 505
R0 305
Result
D max: 30.5 / Type of curve: single_conc /
ExperimentalPorod
MW76.9 kDa76.9 kDa
Volume-123 nm3

P(R)Guinier
Forward scattering, I00.1309 0.12741
Radius of gyration, Rg8.54 nm7.73 nm

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