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- SASDB63: Human dystrophin central domain repeats 11 to 15 (Dystrophin cent... -

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Basic information

Entry
Database: SASBDB / ID: SASDB63
SampleHuman dystrophin central domain repeats 11 to 15
  • Dystrophin central domain repeats 11 to 15. (protein), Dystrophin 1461-1973, Homo sapiens
Function / homology
Function and homology information


regulation of muscle system process / regulation of cellular response to growth factor stimulus / regulation of skeletal muscle contraction / syntrophin complex / synaptic signaling / cardiac muscle cell action potential / regulation of voltage-gated calcium channel activity / negative regulation of peptidyl-cysteine S-nitrosylation / positive regulation of sodium ion transmembrane transporter activity / dystrophin-associated glycoprotein complex ...regulation of muscle system process / regulation of cellular response to growth factor stimulus / regulation of skeletal muscle contraction / syntrophin complex / synaptic signaling / cardiac muscle cell action potential / regulation of voltage-gated calcium channel activity / negative regulation of peptidyl-cysteine S-nitrosylation / positive regulation of sodium ion transmembrane transporter activity / dystrophin-associated glycoprotein complex / regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion / peptide biosynthetic process / cell-substrate junction / motile cilium assembly / dystroglycan binding / vinculin binding / muscle cell development / costamere / neuron projection terminus / Striated Muscle Contraction / filopodium membrane / muscle organ development / structural constituent of muscle / muscle cell cellular homeostasis / maintenance of blood-brain barrier / myosin binding / nitric-oxide synthase binding / Non-integrin membrane-ECM interactions / neuron development / regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion / negative regulation of peptidyl-serine phosphorylation / regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum / skeletal muscle tissue development / regulation of ryanodine-sensitive calcium-release channel activity / cardiac muscle contraction / response to muscle stretch / positive regulation of neuron differentiation / regulation of heart rate / filopodium / sarcolemma / protein localization / structural constituent of cytoskeleton / Z disc / positive regulation of neuron projection development / actin binding / postsynaptic membrane / protein-containing complex assembly / cytoskeleton / membrane raft / synapse / cell surface / protein-containing complex / zinc ion binding / nucleus / plasma membrane / cytosol
Similarity search - Function
Dystrophin/utrophin / EF-hand domain, type 1 / EF-hand domain, type 2 / EF hand / EF-hand / Spectrin repeat / Spectrin repeat / Spectrin/alpha-actinin / Actinin-type actin-binding domain signature 1. / Actinin-type actin-binding domain signature 2. ...Dystrophin/utrophin / EF-hand domain, type 1 / EF-hand domain, type 2 / EF hand / EF-hand / Spectrin repeat / Spectrin repeat / Spectrin/alpha-actinin / Actinin-type actin-binding domain signature 1. / Actinin-type actin-binding domain signature 2. / Spectrin repeats / Actinin-type actin-binding domain, conserved site / Calponin homology domain / Zinc finger ZZ-type signature. / Zinc-binding domain, present in Dystrophin, CREB-binding protein. / Calponin homology (CH) domain / Zinc finger, ZZ type / Zinc finger, ZZ-type / Zinc finger, ZZ-type superfamily / Zinc finger ZZ-type profile. / Calponin homology domain / CH domain superfamily / Calponin homology (CH) domain profile. / WW domain / WW/rsp5/WWP domain signature. / WW domain superfamily / WW/rsp5/WWP domain profile. / Domain with 2 conserved Trp (W) residues / WW domain / EF-hand domain pair
Similarity search - Domain/homology
Biological speciesHomo sapiens (human)
CitationJournal: J Biol Chem / Year: 2018
Title: Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions.
Authors: Olivier Delalande / Anne-Elisabeth Molza / Raphael Dos Santos Morais / Angélique Chéron / Émeline Pollet / Céline Raguenes-Nicol / Christophe Tascon / Emmanuel Giudice / Marine Guilbaud ...Authors: Olivier Delalande / Anne-Elisabeth Molza / Raphael Dos Santos Morais / Angélique Chéron / Émeline Pollet / Céline Raguenes-Nicol / Christophe Tascon / Emmanuel Giudice / Marine Guilbaud / Aurélie Nicolas / Arnaud Bondon / France Leturcq / Nicolas Férey / Marc Baaden / Javier Perez / Pierre Roblin / France Piétri-Rouxel / Jean-François Hubert / Mirjam Czjzek / Elisabeth Le Rumeur /
Abstract: Dystrophin, encoded by the gene, is critical for maintaining plasma membrane integrity during muscle contraction events. Mutations in the gene disrupting the reading frame prevent dystrophin ...Dystrophin, encoded by the gene, is critical for maintaining plasma membrane integrity during muscle contraction events. Mutations in the gene disrupting the reading frame prevent dystrophin production and result in severe Duchenne muscular dystrophy (DMD); in-frame internal deletions allow production of partly functional internally deleted dystrophin and result in less severe Becker muscular dystrophy (BMD). Many known BMD deletions occur in dystrophin's central domain, generally considered to be a monotonous rod-shaped domain based on the knowledge of spectrin family proteins. However, the effects caused by these deletions, ranging from asymptomatic to severe BMD, argue against the central domain serving only as a featureless scaffold. We undertook structural studies combining small-angle X-ray scattering and molecular modeling in an effort to uncover the structure of the central domain, as dystrophin has been refractory to characterization. We show that this domain appears to be a tortuous and complex filament that is profoundly disorganized by the most severe BMD deletion (loss of exons 45-47). Despite the preservation of large parts of the binding site for neuronal nitric oxide synthase (nNOS) in this deletion, computational approaches failed to recreate the association of dystrophin with nNOS. This observation is in agreement with a strong decrease of nNOS immunolocalization in muscle biopsies, a parameter related to the severity of BMD phenotypes. The structural description of the whole dystrophin central domain we present here is a first necessary step to improve the design of microdystrophin constructs toward the goal of a successful gene therapy for DMD.
Contact author
  • Elisabeth Le Rumeur (Université de Rennes 1, Institut Génétique et Développement de Rennes, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #435
Type: atomic / Radius of dummy atoms: 1.90 A / Chi-square value: 24.255625
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Human dystrophin central domain repeats 11 to 15 / Specimen concentration: 1.10-10.80
BufferName: 20 mM Tris 150 mM NaCl 1 mM EDTA 2% glycerol / Concentration: 20.00 mM / pH: 7.5 / Composition: 150 mM NaCl, 1 mM EDTA, 2% glycerol
Entity #286Name: Dystrophin 1461-1973 / Type: protein / Description: Dystrophin central domain repeats 11 to 15. / Formula weight: 60.084 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: P11532
Sequence: GSFQKPANFE QRLQESKMIL DEVKMHLPAL ETKSVEQEVV QSQLNHCVNL YKSLSEVKSE VEMVIKTGRQ IVQKKQTENP KELDERVTAL KLHYNELGAK VTERKQQLEK CLKLSRKMRK EMNVLTEWLA ATDMELTKRS AVEGMPSNLD SEVAWGKATQ KEIEKQKVHL ...Sequence:
GSFQKPANFE QRLQESKMIL DEVKMHLPAL ETKSVEQEVV QSQLNHCVNL YKSLSEVKSE VEMVIKTGRQ IVQKKQTENP KELDERVTAL KLHYNELGAK VTERKQQLEK CLKLSRKMRK EMNVLTEWLA ATDMELTKRS AVEGMPSNLD SEVAWGKATQ KEIEKQKVHL KSITEVGEAL KTVLGKKETL VEDKLSLLNS NWIAVTSRAE EWLNLLLEYQ KHMETFDQNV DHITKWIIQA DTLLDESEKK KPQQKEDVLK RLKAELNDIR PKVDSTRDQA ANLMANRGDH CRKLVEPQIS ELNHRFAAIS HRIKTGKASI PLKELEQFNS DIQKLLEPLE AEIQQGVNLK EEDFNKDMNE DNEGTVKELL QRGDNLQQRI TDERKREEIK IKQQLLQTKH NALKDLRSQR RKKALEISHQ WYQYKRQADD LLKCLDDIEK KLASLPEPRD ERKIKEIDRE LQKKKEELNA VRRQAEGLSE DGAAMAVEPT QIQLSKRWRE IESKFAQFRR LNFAQ

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / : France / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.93 Å / Dist. spec. to detc.: 2.43 mm
DetectorName: Pilatus 1M
Scan
Title: Human dystrophin central domain repeats 11 to 15 / Measurement date: Apr 11, 2011 / Storage temperature: 15 °C / Exposure time: 1.5 sec. / Number of frames: 10 / Unit: 1/nm /
MinMax
Q0.0406 5.0031
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 493 /
MinMax
Q0.007404 0.2423
P(R) point7 499
R0 230
Result
D max: 23 / Type of curve: single_conc /
ExperimentalPorod
MW54.4 kDa54.4 kDa
Volume-87 nm3

P(R)Guinier
Forward scattering, I010.25 10.15
Radius of gyration, Rg6.04 nm5.78 nm

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