+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDAG2 |
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Sample | Lyz in Sodium Acetate
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Function / homology | Function and homology information Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function |
Biological species | Gallus gallus (chicken) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDAG2 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #18 | Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: ran it 10 times and took the model with the lowest NSD (damsel) and visually best fit (pymol) Chi-square value: 2.8561 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #17 | Type: atomic / Chi-square value: 0.844561 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Lyz in Sodium Acetate / Ext coefficient: 26.53 / Contrast: 3.047 / Specific vol: 0.7402 / Purity method: gel filtration / Dry vol: 19648 / Sample MW: 14.3 kDa / Specimen concentration: 8.09 mg/ml / Concentration method: nanodrop |
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Buffer | Name: 40 mM Sodium Acetate / Concentration: 40.00 mM / pH: 3.8 |
Entity #14 | Name: Lys / Type: protein / Description: Lysozyme C / Formula weight: 16.24 / Num. of mol.: 1 / Source: Gallus gallus / References: UniProt: P00698 Sequence: MRSLLILVLC FLPLAALGKV FGRCELAAAM KRHGLDNYRG YSLGNWVCAA KFESNFNTQA TNRNTDGSTD YGILQINSRW WCNDGRTPGS RNLCNIPCSA LLSSDITASV NCAKKIVSDG NGMNAWVAWR NRCKGTDVQA WIRGCRL |
-Experimental information
Beam | Instrument name: DORIS III EMBL X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M-W / Pixsize x: 0.172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Lyz in Sodium Acetate / Measurement date: Sep 21, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 1739 /
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Result | Type of curve: merged / Standard: BSA /
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