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- SASDAA2: Conalbumin in PBS (Ovotransferrin) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDAA2
SampleConalbumin in PBS
  • Ovotransferrin (protein), Gallus gallus
Function / homology
Function and homology information


organomineral extracellular matrix / iron ion transmembrane transport / antimicrobial humoral response / ferric iron binding / acute-phase response / iron ion transport / recycling endosome / antibacterial humoral response / response to lipopolysaccharide / intracellular iron ion homeostasis ...organomineral extracellular matrix / iron ion transmembrane transport / antimicrobial humoral response / ferric iron binding / acute-phase response / iron ion transport / recycling endosome / antibacterial humoral response / response to lipopolysaccharide / intracellular iron ion homeostasis / early endosome / iron ion binding / response to xenobiotic stimulus / extracellular space / plasma membrane
Similarity search - Function
Transferrin-like domain signature 2. / Transferrin family, iron binding site / Transferrin-like domain signature 1. / Transferrin-like domain signature 3. / Transferrin / Transferrin-like domain / Transferrin / Transferrin-like domain profile. / Transferrin
Similarity search - Domain/homology
Biological speciesGallus gallus (chicken)
Contact author
  • Darja Ruskule (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #14
Type: dummy / Software: dammif / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.034289
Search similar-shape structures of this assembly by Omokage search (details)
Model #13
Type: atomic / Software: crysol (28) / Chi-square value: 3.404025
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Conalbumin in PBS / Ext coefficient: 11.63 / Purity method: gel filtration / Dry vol: 99221 / Sample MW: 311.12 kDa / Specimen concentration: 12.17 mg/ml / Concentration method: nanodrop
BufferName: PBS / PK: 7 / pH: 7.4
Entity #12Type: protein / Description: Ovotransferrin / Formula weight: 77.78 / Num. of mol.: 1 / Source: Gallus gallus / References: UniProt: P02789
Sequence: MKLILCTVLS LGIAAVCFAA PPKSVIRWCT ISSPEEKKCN NLRDLTQQER ISLTCVQKAT YLDCIKAIAN NEADAISLDG GQAFEAGLAP YKLKPIAAEV YEHTEGSTTS YYAVAVVKKG TEFTVNDLQG KTSCHTGLGR SAGWNIPIGT LLHRGAIEWE GIESGSVEQA ...Sequence:
MKLILCTVLS LGIAAVCFAA PPKSVIRWCT ISSPEEKKCN NLRDLTQQER ISLTCVQKAT YLDCIKAIAN NEADAISLDG GQAFEAGLAP YKLKPIAAEV YEHTEGSTTS YYAVAVVKKG TEFTVNDLQG KTSCHTGLGR SAGWNIPIGT LLHRGAIEWE GIESGSVEQA VAKFFSASCV PGATIEQKLC RQCKGDPKTK CARNAPYSGY SGAFHCLKDG KGDVAFVKHT TVNENAPDQK DEYELLCLDG SRQPVDNYKT CNWARVAAHA VVARDDNKVE DIWSFLSKAQ SDFGVDTKSD FHLFGPPGKK DPVLKDLLFK DSAIMLKRVP SLMDSQLYLG FEYYSAIQSM RKDQLTPSPR ENRIQWCAVG KDEKSKCDRW SVVSNGDVEC TVVDETKDCI IKIMKGEADA VALDGGLVYT AGVCGLVPVM AERYDDESQC SKTDERPASY FAVAVARKDS NVNWNNLKGK KSCHTAVGRT AGWVIPMGLI HNRTGTCNFD EYFSEGCAPG SPPNSRLCQL CQGSGGIPPE KCVASSHEKY FGYTGALRCL VEKGDVAFIQ HSTVEENTGG KNKADWAKNL QMDDFELLCT DGRRANVMDY RECNLAEVPT HAVVVRPEKA NKIRDLLERQ EKRFGVNGSE KSKFMMFESQ NKDLLFKDLT KCLFKVREGT TYKEFLGDKF YTVISSLKTC NPSDILQMCS FLEGK

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Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Measurement date: Sep 21, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0871 6.0145
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1224 /
MinMax
Q0.294912 3.64138
P(R) point1 1224
R0 11
Result
Type of curve: merged / Standard: BSA /
ExperimentalStandardPorod
MW68 kDa68 kDa-
Volume--116.6 nm3

P(R)Guinier
Forward scattering, I070 82.8
Radius of gyration, Rg3.36 nm3.78 nm

MinMax
D-11
Guinier point38 95

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