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- ChemComp-R1P: 1-O-phosphono-alpha-D-ribofuranose -

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Basic information

EntryDatabase: PDB chemical components / ID: R1P
NameName: 1-O-phosphono-alpha-D-ribofuranose
Synonyms: RIBOSE-1-PHOSPHATE; 1-O-phosphono-alpha-D-ribose; 1-O-phosphono-D-ribose; 1-O-phosphono-ribose

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Chemical information

Composition
Formula: C5H11O8P / Number of atoms: 25 / Formula weight: 230.11 / Formal charge: 0
Others

1a9t

RIB

RDP

Type: D-saccharide, alpha linking / PDB classification: ATOMS / Three letter code: R1P / Model coordinates PDB-ID: 1A9T / Parent comp.: RIB / Replaces: RDP
History
Create componentJul 8, 1999
Modify descriptorJun 4, 2011
Other modificationJul 3, 2020
Modify parent residueJul 17, 2020
Modify nameJul 17, 2020
Modify synonymsJul 17, 2020
Modify linking typeJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
Modify leaving atom flagJul 17, 2020
External linksUniChem / ChemSpider / Brenda / ChEBI / DrugBank / HMDB / KEGG_Ligand / Metabolights / NMRShiftDB / Nikkaji / PubChem / PubChem_TPharma / SureChEMBL / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=P(OC1OC(C(O)C1O)CO)(O)O
CACTVS 3.341OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)OP(=O)(O)O)O)O)O

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SMILES CANONICAL

CACTVS 3.341OC[C@H]1O[C@H](O[P](O)(O)=O)[C@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O

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InChI

InChI 1.03InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1

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InChIKey

InChI 1.03YXJDFQJKERBOBM-TXICZTDVSA-N

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SYSTEMATIC NAME

ACDLabs 10.041-O-phosphono-alpha-D-ribofuranose
OpenEye OEToolkits 1.5.0[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl] dihydrogen phosphate

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IUPAC CARBOHYDRATE SYMBOL

PDB-CARE 1.0a-D-Ribf1PO3

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PDB entries

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