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- PDB-7xyc: CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7xyc | ||||||
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Title | CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 in vitro | ||||||
![]() | phage tail fiber | ||||||
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Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Huang, L. / Xiang, Y. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and assembly of the Klebsiella pneumoniae phage tail fibers Authors: Huang, L. / Xiang, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 272.2 KB | Display | ![]() |
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PDB format | ![]() | 225.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 33519MC ![]() 7xy1C ![]() 7y1cC ![]() 7y22C ![]() 7y23C ![]() 7y3tC ![]() 7y5sC M: map data used to model this data C: citing same article ( |
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Links
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Assembly
Deposited unit | ![]()
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Components
#1: Protein | Mass: 61210.270 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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EM experiment | Aggregation state: PARTICLE / 3D reconstruction method: ![]() |
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Sample preparation
Component | Name: Klebsiella phage Kp7 type II tail fiber / Type: COMPLEX / Details: Trimer of tail fiber proteins / Entity ID: all / Source: RECOMBINANT |
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Molecular weight | Experimental value: NO |
Source (natural) | Organism: ![]() |
Source (recombinant) | Organism: ![]() ![]() ![]() |
Buffer solution | pH: 7.5 |
Specimen | Embedding applied: NO / Shadowing applied: NO / Staining applied![]() ![]() |
Specimen support | Grid material: COPPER / Grid mesh size: 200 divisions/in. / Grid type: Quantifoil R1.2/1.3 |
Vitrification![]() | Cryogen name: ETHANE |
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Electron microscopy imaging
Experimental equipment | ![]() Model: Talos Arctica / Image courtesy: FEI Company |
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Microscopy | Model: FEI TALOS ARCTICA |
Electron gun | Electron source![]() ![]() |
Electron lens | Mode: BRIGHT FIELD![]() ![]() |
Image recording | Electron dose: 50 e/Å2 / Detector mode: COUNTING / Film or detector model: GATAN K2 SUMMIT (4k x 4k) |
Image scans | Width: 3710 / Height: 3710 |
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Processing
EM software | Name: RELION / Version: 3.0.8 / Category: 3D reconstruction![]() |
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CTF correction![]() | Type: PHASE FLIPPING ONLY |
Symmetry | Point symmetry![]() ![]() |
3D reconstruction![]() | Resolution: 3.8 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 113834 / Symmetry type: POINT |
Atomic model building | B value: 146 / Protocol: AB INITIO MODEL / Space: REAL |