+Open data
-Basic information
Entry | Database: PDB / ID: 6yuz | |||||||||
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Title | Homodimeric structure of the rBAT complex | |||||||||
Components | Neutral and basic amino acid transport protein rBAT | |||||||||
Keywords | MEMBRANE PROTEIN / Membrane transporter Heteromeric amino acid transporter Human transporter | |||||||||
Function / homology | Function and homology information basic amino acid transmembrane transporter activity / Defective SLC3A1 causes cystinuria (CSNU) / Defective SLC7A9 causes cystinuria (CSNU) / basic amino acid transport / L-cystine transmembrane transporter activity / L-cystine transport / L-glutamate transmembrane transport / aspartate transmembrane transport / amino acid transmembrane transporter activity / Amino acid transport across the plasma membrane ...basic amino acid transmembrane transporter activity / Defective SLC3A1 causes cystinuria (CSNU) / Defective SLC7A9 causes cystinuria (CSNU) / basic amino acid transport / L-cystine transmembrane transporter activity / L-cystine transport / L-glutamate transmembrane transport / aspartate transmembrane transport / amino acid transmembrane transporter activity / Amino acid transport across the plasma membrane / vacuolar membrane / amino acid transport / brush border membrane / gene expression / carbohydrate metabolic process / protein heterodimerization activity / apical plasma membrane / protein-containing complex binding / extracellular exosome / membrane / plasma membrane Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 2.8 Å | |||||||||
Authors | Wu, D. / Safarian, S. / Michel, H. | |||||||||
Funding support | Germany, 2items
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Citation | Journal: Proc Natl Acad Sci U S A / Year: 2020 Title: Structural basis for amino acid exchange by a human heteromeric amino acid transporter. Authors: Di Wu / Tamara N Grund / Sonja Welsch / Deryck J Mills / Max Michel / Schara Safarian / Hartmut Michel / Abstract: Heteromeric amino acid transporters (HATs) comprise a group of membrane proteins that belong to the solute carrier (SLC) superfamily. They are formed by two different protein components: a light ...Heteromeric amino acid transporters (HATs) comprise a group of membrane proteins that belong to the solute carrier (SLC) superfamily. They are formed by two different protein components: a light chain subunit from an SLC7 family member and a heavy chain subunit from the SLC3 family. The light chain constitutes the transport subunit whereas the heavy chain mediates trafficking to the plasma membrane and maturation of the functional complex. Mutation, malfunction, and dysregulation of HATs are associated with a wide range of pathologies or represent the direct cause of inherited and acquired disorders. Here we report the cryogenic electron microscopy structure of the neutral and basic amino acid transport complex (bAT1-rBAT) which reveals a heterotetrameric protein assembly composed of two heavy and light chain subunits, respectively. The previously uncharacterized interaction between two HAT units is mediated via dimerization of the heavy chain subunits and does not include participation of the light chain subunits. The bAT1 transporter adopts a LeuT fold and is captured in an inward-facing conformation. We identify an amino-acid-binding pocket that is formed by transmembrane helices 1, 6, and 10 and conserved among SLC7 transporters. | |||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | Molecule: MolmilJmol/JSmol |
-Downloads & links
-Download
PDBx/mmCIF format | 6yuz.cif.gz | 218.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6yuz.ent.gz | 182.9 KB | Display | PDB format |
PDBx/mmJSON format | 6yuz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6yuz_validation.pdf.gz | 1.1 MB | Display | wwPDB validaton report |
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Full document | 6yuz_full_validation.pdf.gz | 1.2 MB | Display | |
Data in XML | 6yuz_validation.xml.gz | 49.6 KB | Display | |
Data in CIF | 6yuz_validation.cif.gz | 72.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/yu/6yuz ftp://data.pdbj.org/pub/pdb/validation_reports/yu/6yuz | HTTPS FTP |
-Related structure data
Related structure data | 10936MC 6yupC 6yv1C C: citing same article (ref.) M: map data used to model this data |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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-Components
#1: Protein | Mass: 78937.703 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: SLC3A1, RBAT / Cell line (production host): FlpInTRex / Production host: Homo sapiens (human) / Strain (production host): HEK293 / Variant (production host): FlpInTRex / References: UniProt: Q07837 #2: Sugar | ChemComp-NAG / #3: Chemical | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ELECTRON MICROSCOPY |
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EM experiment | Aggregation state: PARTICLE / 3D reconstruction method: single particle reconstruction |
-Sample preparation
Component | Name: Homodimeric complex of rBAT / Type: COMPLEX / Details: 2 x rBAT / Entity ID: #1 / Source: RECOMBINANT | ||||||||||||||||
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Molecular weight | Value: 157.704 kDa/nm / Experimental value: YES | ||||||||||||||||
Source (natural) | Organism: Homo sapiens (human) | ||||||||||||||||
Source (recombinant) | Organism: Homo sapiens (human) / Strain: HEK293 / Plasmid: pACMV-teto | ||||||||||||||||
Buffer solution | pH: 7.5 | ||||||||||||||||
Buffer component |
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Specimen | Conc.: 2.5 mg/ml / Embedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES | ||||||||||||||||
Specimen support | Grid material: COPPER / Grid mesh size: 400 divisions/in. / Grid type: C-flat-1.2/1.3 4C | ||||||||||||||||
Vitrification | Instrument: FEI VITROBOT MARK IV / Cryogen name: ETHANE / Humidity: 100 % / Chamber temperature: 283.15 K |
-Electron microscopy imaging
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
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Microscopy | Model: FEI TITAN KRIOS |
Electron gun | Electron source: FIELD EMISSION GUN / Accelerating voltage: 300 kV / Illumination mode: FLOOD BEAM |
Electron lens | Mode: BRIGHT FIELD |
Image recording | Electron dose: 40 e/Å2 / Film or detector model: GATAN K3 (6k x 4k) |
-Processing
EM software |
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CTF correction | Type: PHASE FLIPPING AND AMPLITUDE CORRECTION | ||||||||||||||||||||||||||||||||||||
Symmetry | Point symmetry: C2 (2 fold cyclic) | ||||||||||||||||||||||||||||||||||||
3D reconstruction | Resolution: 2.8 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 92789 / Symmetry type: POINT |