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- EMDB-33519: CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 ... -
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Open data
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Basic information
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Title | CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 in vitro | |||||||||
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![]() | Phage type II tail fiber / ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Huang L / Xiang Y | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and assembly of the Klebsiella pneumoniae phage tail fibers Authors: Huang L / Xiang Y | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 2.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 10.3 KB 10.3 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 7.2 KB | Display | ![]() |
Images | ![]() | 37.2 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7xycMC ![]() 7xy1C ![]() 7y1cC ![]() 7y22C ![]() 7y23C ![]() 7y3tC ![]() 7y5sC M: atomic model generated by this map C: citing same article ( |
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Links
EMDB pages | ![]() ![]() |
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Map
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Voxel size | X=Y=Z: 1.17 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
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Sample components
-Entire : Klebsiella phage Kp7 type II tail fiber
Entire | Name: Klebsiella phage Kp7 type II tail fiber |
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Components |
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-Supramolecule #1: Klebsiella phage Kp7 type II tail fiber
Supramolecule | Name: Klebsiella phage Kp7 type II tail fiber / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all / Details: Trimer of tail fiber proteins |
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Source (natural) | Organism: ![]() |
-Macromolecule #1: phage tail fiber
Macromolecule | Name: phage tail fiber / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 61.21027 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: MALVKATFVK DVDGQPWRFS SVAKMKAFNY SCYLGSSVFL ESWHEGAGLG SGLFKVSKGT TEVGDDGSVI VAADGTRLIR VFDGPIFAD MWGALPSSTY NSLPAIKSAY LYASSKLQQL FLGGGSYKVT GSSGIDIDPS LAGISALSRA RVDTTEFTGD Y LFTITSSY ...String: MALVKATFVK DVDGQPWRFS SVAKMKAFNY SCYLGSSVFL ESWHEGAGLG SGLFKVSKGT TEVGDDGSVI VAADGTRLIR VFDGPIFAD MWGALPSSTY NSLPAIKSAY LYASSKLQQL FLGGGSYKVT GSSGIDIDPS LAGISALSRA RVDTTEFTGD Y LFTITSSY SYTPAPYYNN LSVALEGLYV FGNKTEGRSG LLTGRRTTDG VKSYNGQTEI RNCTFDKFDY NIRMGHNSWR IV FYKVNSL NALNANGILY VPSGLDDSGE ILTFYHCQFF DGAGSNIRIS CSSFAMTFVS CSFLNITFTI DAGSSVSVTA LGC NFENPG SQSTRRYIEI TAGHTNIFNV VGGSIVTNAN AGQTQALIHV SANNQINLSN LTIPYGAHYQ QEADSGYHAF CSGQ GYVST SNCSLQLLNG AGCCPIHPSL SVFTNWNLSY ANLNAWTVDK GSAPTSVAEY LSAQGPKGEG VLHVAPTTQG VNISQ VATV SKQAGSMSMS VMVNIISASS NAGQISLAYL DAFDNNLGGV SANLGTTTGW KVIGKNTLRG RLPVGTAKVR LNIQTV AGA DVQYTNILCN II |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 |
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Grid | Model: Quantifoil R1.2/1.3 / Material: COPPER / Mesh: 200 |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TALOS ARCTICA |
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Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | C2 aperture diameter: 50.0 µm / Illumination mode: OTHER / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Digitization - Dimensions - Width: 3710 pixel / Digitization - Dimensions - Height: 3710 pixel / Average electron dose: 50.0 e/Å2 |
Experimental equipment | ![]() Model: Talos Arctica / Image courtesy: FEI Company |
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Image processing
-Atomic model buiding 1
Refinement | Space: REAL / Protocol: AB INITIO MODEL / Overall B value: 146 |
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Output model | ![]() PDB-7xyc: |