登録情報 データベース : EMDB / ID : EMD-24248 構造の表示 ダウンロードとリンクタイトル Partial C. difficile TcdB and CSPG4 fragment マップデータPartial C. difficile TcdB with CSPG4 (410-560) 詳細 試料複合体 : The complex of TcdB and CSPG4 fragment細胞器官・細胞要素 : Ternary structure of C-terminus of CSPG4 domain 1タンパク質・ペプチド : Chondroitin sulfate proteoglycan 4細胞器官・細胞要素 : Ternary structure of Clostridium difficile TcdB 詳細機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
Chondroitin sulfate biosynthesis / Defective CHST3 causes SEDCJD / Defective CHST14 causes EDS, musculocontractural type / Defective CHSY1 causes TPBS / Dermatan sulfate biosynthesis / Defective B3GALT6 causes EDSP2 and SEMDJL1 / CS/DS degradation / Defective B4GALT7 causes EDS, progeroid type / Defective B3GAT3 causes JDSSDHD / substrate-dependent cell migration ... Chondroitin sulfate biosynthesis / Defective CHST3 causes SEDCJD / Defective CHST14 causes EDS, musculocontractural type / Defective CHSY1 causes TPBS / Dermatan sulfate biosynthesis / Defective B3GALT6 causes EDSP2 and SEMDJL1 / CS/DS degradation / Defective B4GALT7 causes EDS, progeroid type / Defective B3GAT3 causes JDSSDHD / substrate-dependent cell migration / A tetrasaccharide linker sequence is required for GAG synthesis / glial cell migration / tissue remodeling / ruffle assembly / glucosyltransferase activity / host cell cytosol / 転移酵素; グリコシル基を移すもの; 六炭糖残基を移すもの / lamellipodium membrane / platelet-derived growth factor receptor signaling pathway / coreceptor activity / cysteine-type peptidase activity / ruffle / lysosomal lumen / host cell endosome membrane / Golgi lumen / positive regulation of peptidyl-tyrosine phosphorylation / toxin activity / angiogenesis / collagen-containing extracellular matrix / positive regulation of MAPK cascade / 加水分解酵素; プロテアーゼ; ペプチド結合加水分解酵素; システインプロテアーゼ / intracellular signal transduction / apical plasma membrane / focal adhesion / lipid binding / protein kinase binding / host cell plasma membrane / cell surface / proteolysis / extracellular exosome / extracellular region / nucleoplasm / membrane / metal ion binding / plasma membrane 類似検索 - 分子機能 Cadherin-like / CSPG repeat / CSPG repeat profile. / TcdA/TcdB toxin, N-terminal helical domain / TcdB toxin N-terminal helical domain / TcdA/TcdB toxin, catalytic glycosyltransferase domain / TcdA/TcdB catalytic glycosyltransferase domain / Dermonecrotic/RTX toxin, membrane localization domain / Membrane Localization Domain / TcdA/TcdB toxin, pore forming domain ... Cadherin-like / CSPG repeat / CSPG repeat profile. / TcdA/TcdB toxin, N-terminal helical domain / TcdB toxin N-terminal helical domain / TcdA/TcdB toxin, catalytic glycosyltransferase domain / TcdA/TcdB catalytic glycosyltransferase domain / Dermonecrotic/RTX toxin, membrane localization domain / Membrane Localization Domain / TcdA/TcdB toxin, pore forming domain / TcdA/TcdB pore forming domain / Laminin G domain / CGT/MARTX, cysteine protease (CPD) domain / CGT/MARTX, cysteine protease (CPD) domain superfamily / Peptidase C80 family / CGT/MARTX cysteine protease (CPD) domain profile. / Laminin G domain profile. / Choline-binding repeat / Putative cell wall binding repeat / Laminin G domain / Laminin G domain / Cell wall/choline-binding repeat / Cell wall-binding repeat profile. / Nucleotide-diphospho-sugar transferases / Concanavalin A-like lectin/glucanase domain superfamily 類似検索 - ドメイン・相同性 Toxin B / Chondroitin sulfate proteoglycan 4 類似検索 - 構成要素生物種 Clostridioides difficile (バクテリア) / Homo sapiens (ヒト)手法 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度 : 3.4 Å 詳細 データ登録者Jiang M / Zhang J 資金援助 米国, 2件 詳細 詳細を隠すOrganization Grant number 国 Welch Foundation 米国 National Institutes of Health/National Center for Research Resources (NIH/NCRR) 米国
引用ジャーナル : To Be Published タイトル : Structural Basis for Receptor Recognition of Clostridium difficile Toxin B and its Dissociation upon Acidification著者 : Jiang M / Zhang J 履歴 登録 2021年6月16日 - ヘッダ(付随情報) 公開 2022年3月2日 - マップ公開 2022年3月2日 - 更新 2022年3月2日 - 現状 2022年3月2日 処理サイト : RCSB / 状態 : 公開
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