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- ChemComp-RP5: 5-O-phosphono-beta-D-ribofuranose -

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Basic information

EntryDatabase: PDB chemical components / ID: RP5
NameName: 5-O-phosphono-beta-D-ribofuranose
Synonyms: [(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE; 5-O-phosphono-beta-D-ribose;

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Chemical information

Composition
Formula: C5H11O8P / Number of atoms: 25 / Formula weight: 230.11 / Formal charge: 0
Others

1oge

BDR

Type: D-saccharide, beta linking / PDB classification: ATOMS / Three letter code: RP5 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 1OGE / Parent comp.: BDR
History
Create componentApr 30, 2003
Modify nameFeb 21, 2011
Modify descriptorJun 4, 2011
Other modificationJul 3, 2020
Modify parent residueJul 17, 2020
Modify synonymsJul 17, 2020
Modify internal typeJul 17, 2020
Modify linking typeJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
Modify leaving atom flagJul 17, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01O=P(O)(O)OCC1OC(O)C(O)C1O
CACTVS 3.370O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0C(C1C(C(C(O1)O)O)O)OP(=O)(O)O

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SMILES CANONICAL

CACTVS 3.370O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.0C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O)OP(=O)(O)O

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InChI

InChI 1.03InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1

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InChIKey

InChI 1.03KTVPXOYAKDPRHY-TXICZTDVSA-N

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SYSTEMATIC NAME

ACDLabs 12.015-O-phosphono-beta-D-ribofuranose
OpenEye OEToolkits 1.7.0[(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate

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IUPAC CARBOHYDRATE SYMBOL

PDB-CARE 1.0b-D-Ribf5PO3

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PDB entries

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