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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 1aut | ||||||
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タイトル | Human activated protein C | ||||||
![]() | (ACTIVATED PROTEIN C) x 2 | ||||||
![]() | HYDROLASE/HYDROLASE INHIBITOR / SERINE PROTEINASE / PLASMA CALCIUM BINDING / GLYCOPROTEIN / HYDROLASE-HYDROLASE INHIBITOR complex / BLOOD CLOTTING | ||||||
機能・相同性 | ![]() protein C (activated) / positive regulation of establishment of endothelial barrier / negative regulation of coagulation / negative regulation of blood coagulation / Gamma-carboxylation of protein precursors / Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus / Common Pathway of Fibrin Clot Formation / Removal of aminoterminal propeptides from gamma-carboxylated proteins / Intrinsic Pathway of Fibrin Clot Formation / Cell surface interactions at the vascular wall ...protein C (activated) / positive regulation of establishment of endothelial barrier / negative regulation of coagulation / negative regulation of blood coagulation / Gamma-carboxylation of protein precursors / Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus / Common Pathway of Fibrin Clot Formation / Removal of aminoterminal propeptides from gamma-carboxylated proteins / Intrinsic Pathway of Fibrin Clot Formation / Cell surface interactions at the vascular wall / Post-translational protein phosphorylation / negative regulation of inflammatory response / Golgi lumen / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / blood coagulation / endoplasmic reticulum lumen / serine-type endopeptidase activity / calcium ion binding / negative regulation of apoptotic process / Golgi apparatus / endoplasmic reticulum / proteolysis / extracellular space / extracellular region 類似検索 - 分子機能 | ||||||
生物種 | ![]() | ||||||
手法 | ![]() ![]() | ||||||
![]() | Mather, T. / Oganessyan, V. / Hof, P. / Bode, W. / Huber, R. / Foundling, S. / Esmon, C. | ||||||
![]() | ![]() タイトル: The 2.8 A crystal structure of Gla-domainless activated protein C. 著者: Mather, T. / Oganessyan, V. / Hof, P. / Huber, R. / Foundling, S. / Esmon, C. / Bode, W. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 102.1 KB | 表示 | ![]() |
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PDB形式 | ![]() | 77.2 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 462.3 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 473.1 KB | 表示 | |
XML形式データ | ![]() | 9.8 KB | 表示 | |
CIF形式データ | ![]() | 15 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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単位格子 |
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要素
#1: タンパク質 | 分子量: 28091.115 Da / 分子数: 1 / 由来タイプ: 天然 / 詳細: GLA-DOMAIN REMOVED BY CHYMOTRYPSIN / 由来: (天然) ![]() |
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#2: タンパク質 | 分子量: 12730.634 Da / 分子数: 1 / 由来タイプ: 天然 / 詳細: GLA-DOMAIN REMOVED BY CHYMOTRYPSIN / 由来: (天然) ![]() |
#3: 化合物 | ChemComp-0G6 / |
#4: 水 | ChemComp-HOH / |
非ポリマーの詳細 | THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN ...THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETH |
配列の詳細 | THE CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED HERE, BASED ON THE TOPOLOGICAL ...THE CHYMOTRYPS |
-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 3.14 Å3/Da / 溶媒含有率: 61 % | ||||||||||||||||||||
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結晶化 | pH: 4.7 / 詳細: 0.1 M CITRATE, 20% ISOPROPANOL 2% PEG 20000 PH 4.7 | ||||||||||||||||||||
結晶化 | *PLUS 手法: 蒸気拡散法, ハンギングドロップ法 | ||||||||||||||||||||
溶液の組成 | *PLUS
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-データ収集
回折 | 平均測定温度: 285 K |
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放射光源 | 由来: ![]() |
検出器 | タイプ: MARRESEARCH / 検出器: IMAGE PLATE / 日付: 1995年2月5日 |
放射 | モノクロメーター: GRAPHITE(002) / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 1.5418 Å / 相対比: 1 |
反射 | 解像度: 2.8→8 Å / Num. obs: 12294 / % possible obs: 92.4 % / Observed criterion σ(I): 3 / 冗長度: 2 % / Rmerge(I) obs: 0.126 |
反射 シェル | 解像度: 2.8→2.9 Å / % possible all: 85.5 |
反射 シェル | *PLUS % possible obs: 85.5 % |
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解析
ソフトウェア |
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精密化 | 構造決定の手法: ![]() 開始モデル: FACTOR XA POLY-ALA 解像度: 2.8→8 Å / σ(F): 2 詳細: THE FOLLOWING SEGMENTS ARE DISORDERED AND ARE MODELED STEREOCHEMICALLY TO PRESERVE CHAIN CONTINUITY: C 60 - C 62, C 148 - C 151, L 70 - L 77. HIS L 107 IS IN A TIGHT TURN AND HAS TORSION ...詳細: THE FOLLOWING SEGMENTS ARE DISORDERED AND ARE MODELED STEREOCHEMICALLY TO PRESERVE CHAIN CONTINUITY: C 60 - C 62, C 148 - C 151, L 70 - L 77. HIS L 107 IS IN A TIGHT TURN AND HAS TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS. THE STRAIN IS STABILIZED BY A HYDROGEN BOND TO ASN L 102. RESIDUE BHD L 71 HAS BEEN SHOWN TO BE BETA-HYDROXYLATED ALTHOUGH IT IS IN A DISORDERED SEGMENT OF THIS STRUCTURE. THE HYDROXYL GROUP IS NOT VISIBLE.
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原子変位パラメータ | Biso mean: 26.7 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化ステップ | サイクル: LAST / 解像度: 2.8→8 Å
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拘束条件 |
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ソフトウェア | *PLUS 名称: PROLSQ / 分類: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化 | *PLUS Rfactor obs: 0.184 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶媒の処理 | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | *PLUS |