登録情報 | データベース: PDB / ID: 5l7i |
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タイトル | Structure of human Smoothened in complex with Vismodegib |
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要素 | Smoothened homolog,Soluble cytochrome b562,Smoothened homolog |
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キーワード | MEMBRANE PROTEIN / G protein coupled receptor / morphogen signaling / hedgehog signaling / signaling protein |
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機能・相同性 | 機能・相同性情報
ventral midline determination / mesenchymal to epithelial transition involved in metanephric renal vesicle formation / regulation of heart morphogenesis / contact inhibition / negative regulation of hair follicle development / central nervous system neuron differentiation / 9+0 non-motile cilium / pancreas morphogenesis / regulation of somatic stem cell population maintenance / epithelial-mesenchymal cell signaling ...ventral midline determination / mesenchymal to epithelial transition involved in metanephric renal vesicle formation / regulation of heart morphogenesis / contact inhibition / negative regulation of hair follicle development / central nervous system neuron differentiation / 9+0 non-motile cilium / pancreas morphogenesis / regulation of somatic stem cell population maintenance / epithelial-mesenchymal cell signaling / myoblast migration / atrial septum morphogenesis / spinal cord dorsal/ventral patterning / determination of left/right asymmetry in lateral mesoderm / midgut development / left/right axis specification / ciliary tip / Activation of SMO / thalamus development / somite development / patched binding / forebrain morphogenesis / cellular response to cholesterol / type B pancreatic cell development / positive regulation of branching involved in ureteric bud morphogenesis / positive regulation of organ growth / BBSome-mediated cargo-targeting to cilium / dorsal/ventral neural tube patterning / smooth muscle tissue development / pattern specification process / cerebellar cortex morphogenesis / mammary gland epithelial cell differentiation / dentate gyrus development / dopaminergic neuron differentiation / commissural neuron axon guidance / oxysterol binding / positive regulation of multicellular organism growth / positive regulation of smoothened signaling pathway / Class B/2 (Secretin family receptors) / neural crest cell migration / cell fate specification / cAMP-dependent protein kinase inhibitor activity / ciliary membrane / anterior/posterior pattern specification / positive regulation of mesenchymal cell proliferation / negative regulation of epithelial cell differentiation / hair follicle morphogenesis / smoothened signaling pathway / positive regulation of neuroblast proliferation / heart looping / negative regulation of DNA binding / odontogenesis of dentin-containing tooth / protein kinase A catalytic subunit binding / endoplasmic reticulum-Golgi intermediate compartment / neuroblast proliferation / vasculogenesis / Hedgehog 'off' state / skeletal muscle fiber development / positive regulation of epithelial cell proliferation / homeostasis of number of cells within a tissue / epithelial cell proliferation / protein sequestering activity / centriole / astrocyte activation / negative regulation of protein phosphorylation / central nervous system development / G protein-coupled receptor activity / electron transport chain / Hedgehog 'on' state / multicellular organism growth / cilium / cerebral cortex development / positive regulation of protein import into nucleus / osteoblast differentiation / protein import into nucleus / endocytic vesicle membrane / late endosome / gene expression / in utero embryonic development / periplasmic space / protein stabilization / electron transfer activity / positive regulation of cell migration / iron ion binding / negative regulation of gene expression / intracellular membrane-bounded organelle / dendrite / heme binding / positive regulation of gene expression / negative regulation of apoptotic process / apoptotic process / negative regulation of transcription by RNA polymerase II / Golgi apparatus / endoplasmic reticulum / positive regulation of transcription by RNA polymerase II / extracellular exosome / plasma membrane類似検索 - 分子機能 Frizzled cysteine-rich domain / Frizzled cysteine-rich domain / Smoothened, transmembrane domain / Smoothened, cysteine-rich domain / Frizzled/Smoothened, transmembrane domain / Frizzled/Smoothened family membrane region / Frizzled/Smoothened family membrane region / Frizzled/secreted frizzled-related protein / Frizzled / Frizzled domain ...Frizzled cysteine-rich domain / Frizzled cysteine-rich domain / Smoothened, transmembrane domain / Smoothened, cysteine-rich domain / Frizzled/Smoothened, transmembrane domain / Frizzled/Smoothened family membrane region / Frizzled/Smoothened family membrane region / Frizzled/secreted frizzled-related protein / Frizzled / Frizzled domain / Frizzled cysteine-rich domain superfamily / Fz domain / Frizzled (fz) domain profile. / Rhopdopsin 7-helix transmembrane proteins / Rhodopsin 7-helix transmembrane proteins / GPCR, family 2-like / G-protein coupled receptors family 2 profile 2. / Cytochrome b562 / Cytochrome b562 / Cytochrome c/b562 / Up-down Bundle / Orthogonal Bundle / Mainly Alpha類似検索 - ドメイン・相同性 Chem-MPG / Chem-VIS / Soluble cytochrome b562 / Protein smoothened類似検索 - 構成要素 |
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生物種 | Homo sapiens (ヒト) Escherichia coli (大腸菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.3 Å |
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データ登録者 | Byrne, E.X.B. / Sircar, R. / Miller, P.S. / Hedger, G. / Luchetti, G. / Nachtergaele, S. / Tully, M.D. / Mydock-McGrane, L. / Covey, D.F. / Rambo, R.F. ...Byrne, E.X.B. / Sircar, R. / Miller, P.S. / Hedger, G. / Luchetti, G. / Nachtergaele, S. / Tully, M.D. / Mydock-McGrane, L. / Covey, D.F. / Rambo, R.F. / Sansom, M.S.P. / Newstead, S. / Rohatgi, R. / Siebold, C. |
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引用 | ジャーナル: Nature / 年: 2016 タイトル: Structural basis of Smoothened regulation by its extracellular domains. 著者: Byrne, E.F. / Sircar, R. / Miller, P.S. / Hedger, G. / Luchetti, G. / Nachtergaele, S. / Tully, M.D. / Mydock-McGrane, L. / Covey, D.F. / Rambo, R.P. / Sansom, M.S. / Newstead, S. / Rohatgi, R. / Siebold, C. |
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履歴 | 登録 | 2016年6月3日 | 登録サイト: PDBE / 処理サイト: PDBE |
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改定 1.0 | 2016年7月20日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2016年7月27日 | Group: Structure summary |
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改定 1.2 | 2016年8月3日 | Group: Database references |
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改定 1.3 | 2016年8月10日 | Group: Database references |
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改定 1.4 | 2020年7月29日 | Group: Data collection / Derived calculations / Structure summary カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_site / struct_site_gen Item: _chem_comp.name / _chem_comp.type ..._chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.pdbx_role 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
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改定 1.5 | 2024年1月10日 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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