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- PDB-5k09: Crystal Structure of COMT in complex with a thiazole ligand -

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基本情報

登録情報
データベース: PDB / ID: 5k09
タイトルCrystal Structure of COMT in complex with a thiazole ligand
要素Catechol O-methyltransferase
キーワードTRANSFERASE / METHYLTRANSFERASE / NEUROTRANSMITTER DEGRADATION / CATECHOL
機能・相同性
機能・相同性情報


: / response to olanzapine / response to risperidone / Enzymatic degradation of dopamine by COMT / Enzymatic degradation of Dopamine by monoamine oxidase / Methylation / norepinephrine secretion / response to dopamine / mastication / catecholamine catabolic process ...: / response to olanzapine / response to risperidone / Enzymatic degradation of dopamine by COMT / Enzymatic degradation of Dopamine by monoamine oxidase / Methylation / norepinephrine secretion / response to dopamine / mastication / catecholamine catabolic process / S-adenosylhomocysteine metabolic process / catechol O-methyltransferase activity / catechol O-methyltransferase / renal sodium excretion / developmental process / renal filtration / S-adenosylmethionine metabolic process / renin secretion into blood stream / catecholamine metabolic process / dopamine secretion / renal albumin absorption / artery development / habituation / cerebellar cortex morphogenesis / dopamine catabolic process / response to salt / glomerulus development / norepinephrine metabolic process / response to angiotensin / fear response / synaptic transmission, dopaminergic / short-term memory / cellular response to phosphate starvation / cellular response to cocaine / estrogen metabolic process / cholesterol efflux / prostaglandin metabolic process / response to food / response to corticosterone / response to temperature stimulus / response to pain / glycogen metabolic process / negative regulation of dopamine metabolic process / startle response / detection of temperature stimulus involved in sensory perception of pain / dopamine metabolic process / exploration behavior / response to stress / multicellular organismal response to stress / behavioral fear response / response to cytokine / response to amphetamine / learning / kidney development / negative regulation of smooth muscle cell proliferation / female pregnancy / visual learning / response to wounding / response to estrogen / response to toxic substance / regulation of blood pressure / multicellular organism growth / cognition / memory / gene expression / cell body / response to oxidative stress / response to lipopolysaccharide / methylation / vesicle / dendritic spine / postsynaptic membrane / response to hypoxia / learning or memory / postsynapse / response to xenobiotic stimulus / axon / dendrite / glutamatergic synapse / magnesium ion binding / membrane / cytosol
類似検索 - 分子機能
Catechol O-methyltransferase, eukaryotic / Class I-like SAM-dependent O-methyltransferase / O-methyltransferase / SAM-dependent O-methyltransferase class I-type profile. / Vaccinia Virus protein VP39 / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta
類似検索 - ドメイン・相同性
Chem-6PQ / : / PHOSPHATE ION / Catechol O-methyltransferase
類似検索 - 構成要素
生物種Rattus norvegicus (ドブネズミ)
手法X線回折 / シンクロトロン / 解像度: 2.7 Å
データ登録者Ehler, A. / Rodriguez-Sarmiento, R.M. / Rudolph, M.G.
引用ジャーナル: J. Med. Chem. / 年: 2016
タイトル: Design of Potent and Druglike Nonphenolic Inhibitors for Catechol O-Methyltransferase Derived from a Fragment Screening Approach Targeting the S-Adenosyl-l-methionine Pocket.
著者: Lerner, C. / Jakob-Roetne, R. / Buettelmann, B. / Ehler, A. / Rudolph, M. / Rodriguez Sarmiento, R.M.
履歴
登録2016年5月17日登録サイト: RCSB / 処理サイト: PDBE
改定 1.02016年9月7日Provider: repository / タイプ: Initial release
改定 1.12016年10月12日Group: Database references
改定 1.22016年12月21日Group: Database references
改定 1.32019年6月12日Group: Data collection / Structure summary
カテゴリ: audit_author / database_PDB_rev / database_PDB_rev_record
Item: _audit_author.name
改定 1.42024年5月8日Group: Data collection / Database references / Derived calculations
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr1_symmetry / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.ptnr3_symmetry / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr1_symmetry / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn.ptnr2_symmetry

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Catechol O-methyltransferase
B: Catechol O-methyltransferase
C: Catechol O-methyltransferase
D: Catechol O-methyltransferase
E: Catechol O-methyltransferase
F: Catechol O-methyltransferase
G: Catechol O-methyltransferase
H: Catechol O-methyltransferase
I: Catechol O-methyltransferase
J: Catechol O-methyltransferase
K: Catechol O-methyltransferase
L: Catechol O-methyltransferase
M: Catechol O-methyltransferase
N: Catechol O-methyltransferase
O: Catechol O-methyltransferase
P: Catechol O-methyltransferase
Q: Catechol O-methyltransferase
R: Catechol O-methyltransferase
S: Catechol O-methyltransferase
T: Catechol O-methyltransferase
U: Catechol O-methyltransferase
V: Catechol O-methyltransferase
W: Catechol O-methyltransferase
X: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)592,585118
ポリマ－581,99324
非ポリマー10,59394
水9,638535
1
A: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
2
B: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
3
C: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
4
D: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
5
E: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
6
F: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
7
G: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
8
H: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
9
I: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
10
J: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
11
K: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7616
ポリマ－24,2501
非ポリマー5125
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
12
L: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
13
M: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7616
ポリマ－24,2501
非ポリマー5125
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
14
N: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7616
ポリマ－24,2501
非ポリマー5125
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
15
O: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
16
P: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
17
Q: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
18
R: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6665
ポリマ－24,2501
非ポリマー4174
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
19
S: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7616
ポリマ－24,2501
非ポリマー5125
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
20
T: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
21
U: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
22
V: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
23
W: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,7225
ポリマ－24,2501
非ポリマー4734
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
24
X: Catechol O-methyltransferase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,6274
ポリマ－24,2501
非ポリマー3783
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)84.035, 138.418, 158.501
Angle α, β, γ (deg.)91.480, 97.190, 90.160
Int Tables number1
Space group name H-MP1

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要素

#1: タンパク質 ...
Catechol O-methyltransferase


分子量: 24249.695 Da / 分子数: 24 / 由来タイプ: 組換発現 / 由来: (組換発現) Rattus norvegicus (ドブネズミ) / 遺伝子: Comt / 発現宿主: Escherichia coli BL21(DE3) (大腸菌) / 参照: UniProt: P22734, catechol O-methyltransferase
#2: 化合物...
ChemComp-6PQ / 5-{3-[(4-methoxyphenyl)methyl]-1H-pyrazol-5-yl}-2,4-dimethyl-1,3-thiazole


分子量: 299.391 Da / 分子数: 24 / 由来タイプ: 合成 / 式: C16H17N3OS
#3: 化合物...
ChemComp-K / POTASSIUM ION / カリウムカチオン


分子量: 39.098 Da / 分子数: 58 / 由来タイプ: 合成 / 式: K
#4: 化合物
ChemComp-PO4 / PHOSPHATE ION / ホスファ-ト


分子量: 94.971 Da / 分子数: 12 / 由来タイプ: 合成 / 式: PO4
#5: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 535 / 由来タイプ: 天然 / 式: H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.14 Å3/Da / 溶媒含有率: 60.85 %
結晶化温度: 295 K / 手法: 蒸気拡散法, シッティングドロップ法
詳細: 0.1 M TRIS-HCL pH 7, 1.8 M ammonium sulfate, 0.2 M NaCl

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: SLS / ビームライン: X10SA / 波長: 0.99998 Å
検出器タイプ: PSI PILATUS 6M / 検出器: PIXEL / 日付: 2012年3月12日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.99998 Å / 相対比: 1
反射解像度: 2.7→48.84 Å / Num. obs: 190265 / % possible obs: 95.7 % / Observed criterion σ(I): -3 / 冗長度: 1.69 % / Biso Wilson estimate: 55.024 Å2 / CC1/2: 0.993 / Rmerge(I) obs: 0.086 / Net I/σ(I): 7.98
反射 シェル
解像度 (Å)最高解像度 (Å)Rmerge(I) obsMean I/σ(I) obsDiffraction-ID% possible all
2.7-2.770.8391.02194.7
2.77-2.850.6341.36195.1
2.85-2.930.5151.73195.6
2.93-3.020.4292.04195.8
3.02-3.120.3352.61195.9
3.12-3.230.2593.42195.8
3.23-3.350.1984.32195.9
3.35-3.490.1386.03195.9
3.49-3.640.1057.55196.1
3.64-3.820.0888.79195.7
3.82-4.020.07110.3195.9
4.02-4.270.05112.73195.7
4.27-4.560.04115.22195.2
4.56-4.930.03716.84196.6
4.93-5.40.04115.43196.6
5.4-6.040.04514.08196.1
6.04-6.970.03815.76196.8
6.97-8.540.02820.59195.8
8.54-12.070.0228.56194.5
12.070.02328.64192.6

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解析

ソフトウェア
名称バージョン分類
XSCALEデータスケーリング
PDB_EXTRACT3.2データ抽出
PHENIX精密化
XDSデータ削減
PHENIX位相決定
精密化解像度: 2.7→48.836 Å / SU ML: 0.42 / 交差検証法: FREE R-VALUE / σ(F): 1.96 / 位相誤差: 27.52
Rfactor反射数%反射
Rfree0.2356 9568 5.03 %
Rwork0.1647 --
obs0.1683 190265 97.84 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å
原子変位パラメータBiso max: 178.62 Å2 / Biso mean: 55.3101 Å2 / Biso min: 11.95 Å2
精密化ステップサイクル: final / 解像度: 2.7→48.836 Å
タンパク質核酸リガンド溶媒全体
原子数40482 0 622 535 41639
Biso mean--50.59 41.59 -
残基数----5174
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
11.52451.2749-0.35411.7199-0.58484.39420.0542-0.0687-0.38010.12160.0380.06710.5057-0.3888-0.08760.49-0.0573-0.03210.3761-0.06570.4341-21.950231.0272-35.016
22.05390.37760.77911.45630.40692.41250.02470.0882-0.1805-0.10370.00830.0952-0.1194-0.1828-0.0070.32670.0008-0.01720.2983-0.03160.3314-15.382347.4992-36.4101
31.50780.5123-0.12661.37750.37172.45320.05420.00250.03580.0315-0.14220.1024-0.6136-0.00880.12910.4318-0.0144-0.02510.2549-0.01020.3045-13.777957.9582-23.3721
42.31590.88240.42952.2284-0.48334.4695-0.1327-0.4051-0.5813-0.30020.50460.17680.8475-0.4348-0.19210.484-0.0968-0.00340.2216-0.02340.4746-13.7244-39.94481.8296
51.66010.09050.29351.94670.61622.1705-0.026-0.0766-0.0891-0.19240.08320.13240.0429-0.145-0.0540.3355-0.06650.02470.24450.07090.2917-7.3156-23.75561.207
61.0031-0.0457-0.10990.87570.6572.0224-0.1447-0.23130.1176-0.06360.1192-0.1664-0.14710.19670.02450.3486-0.0510.03390.29620.07310.2991-1.7367-14.905113.1014
71.53581.5068-0.07992.8026-2.34962.9664-0.0138-0.04610.02910.1453-0.0407-0.0733-0.1454-0.0798-0.01610.4028-0.01990.07870.17960.03070.4159-11.559-16.633418.961
84.219-1.30310.76173.4594-1.3434.1631-0.1089-0.39790.82980.4146-0.2083-1.0391-0.36090.67380.30460.4087-0.1197-0.04540.7608-0.00120.564629.563341.3733-3.7384
95.3945-1.5388-2.37952.1450.34873.8309-0.0779-0.9144-0.83820.60710.06530.1077-0.13370.31270.07660.4083-0.00620.03030.76990.11240.564525.524730.7024-3.0326
103.1867-0.01950.26873.33690.59583.3623-0.1445-0.4369-0.00680.45320.3298-0.10310.4110.2366-0.1040.30510.0194-0.02410.39810.04690.47213.470829.82-8.8143
112.6180.50310.45670.535-0.45781.76780.07750.18770.0426-0.1407-0.0695-0.2560.0070.58810.00340.36780.03150.01950.4934-0.01710.464819.802835.3813-21.1172
124.0929-0.7209-1.36513.87250.95845.5088-0.24750.13730.4688-0.79180.52060.0845-0.89340.0782-0.01540.43180.0378-0.03530.3750.13290.41434.724941.6176-25.1826
131.06170.2058-0.29960.49-0.26541.83260.01880.28890.0083-0.1058-0.07770.10840.10050.03140.01030.3550.0487-0.00380.2991-0.02530.38461.682234.4217-21.2754
141.2253-0.3064-0.20521.6482-0.19263.93010.1994-0.1902-0.47660.0722-0.14940.21080.5759-0.39040.05610.3909-0.0107-0.03880.40480.02360.47821.066929.3277-10.9581
151.1315-0.4038-1.47121.15150.86845.2439-0.03630.1712-0.146-0.1372-0.07270.0117-0.4672-0.04930.22380.3066-0.02640.02560.30510.05950.40160.450430.7972-15.462
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1022.0475-0.713-0.57241.9817-0.85132.7635-0.03930.1643-0.56020.22250.3678-0.14690.5940.1287-0.22540.54140.1391-0.0740.58950.21460.752216.5271-53.777648.4777
1031.93270.21040.39492.9551.01142.6307-0.154-0.4608-0.4546-0.04760.2589-0.314900.2779-0.11470.33920.15410.00670.70650.06420.468618.3289-37.554549.206
1041.1403-0.3045-0.2081.84630.12010.5362-0.0077-0.6832-0.28020.55730.1509-0.01360.32660.1215-0.12030.66080.20760.05230.86970.29690.51418.1607-41.366760.5367
1050.6308-0.375-0.43351.51180.01241.5363-0.2076-0.4230.10930.13060.32350.12460.0603-0.12-0.0980.35140.12570.02990.68180.11340.35355.0314-26.538352.9942
1060.5178-0.6991-0.32471.21040.05572.13220.1027-0.46830.27160.09620.09-0.314-0.4498-0.3066-0.19760.40630.06330.04250.6543-0.08530.4114.2078-23.79948.2967
1075.70870.57840.31412.67310.27023.7195-0.2404-0.276-0.57720.77350.058-0.31170.45930.8030.20180.48060.151-0.10180.5611-0.11570.5822-28.9897-51.9666-71.8438
1082.39660.97030.30752.58491.63885.17480.26260.22460.13320.0965-0.32210.94750.89410.17920.17940.54910.117-0.11890.5315-0.18350.6087-37.7354-45.5982-72.6495
1092.1667-0.64350.85732.2192-0.88622.49750.35030.3382-0.0869-0.3893-0.05970.74270.2142-0.4036-0.22960.4620.17-0.11510.5719-0.0730.5086-35.0385-31.4206-72.7181
1101.05820.82860.04651.09140.74510.78150.24870.738-0.3334-0.4462-0.14750.15540.13780.2847-0.06670.58090.1586-0.06590.7069-0.15060.3697-28.7341-34.1424-81.6897
1110.74180.185-0.34952.56180.42960.60370.16730.4983-0.1748-0.918-0.02650.03260.00370.3479-0.06810.64920.1532-0.05210.8564-0.1330.4133-21.6197-36.6592-85.1939
1122.6562-0.58421.46633.1088-0.33482.72260.1149-0.23560.4058-0.3002-0.1032-0.31850.44920.7759-0.01230.43620.1498-0.01380.723-0.0390.4304-18.5114-24.5345-75.7265
1131.13180.6027-0.00391.4879-0.18591.91430.1410.35110.185-0.1799-0.00210.1582-0.47320.2338-0.11870.49720.033-0.04150.49950.02970.3337-27.3976-19.3171-71.7315
1143.21220.74640.38020.14980.43771.50630.18420.4763-0.1454-0.1594-0.04020.13230.0369-0.232-0.09830.34930.0557-0.04270.5745-0.07950.4849-45.8417-36.171-52.693
1153.0656-0.52740.67670.76520.32561.81240.0475-0.4236-0.22370.1670.05250.2499-0.0203-0.6132-0.05830.3164-0.00630.03270.49680.01770.454-45.0306-34.0661-39.0537
1166.19841.0338-2.3816.4625-1.3717.512-0.5187-0.42160.65270.63920.3715-0.2354-1.5117-0.90160.12180.3360.0222-0.09740.3965-0.06370.3913-29.4061-28.2574-35.2314
1171.71890.19070.151.0251-0.94031.640.20720.0412-0.22810.10780.01860.00720.00580.228-0.17330.29930.02-0.01490.2337-0.03230.3331-26.0213-37.3288-43.3741
1181.47951.21610.10476.18071.11611.3369-0.41490.06030.2746-1.13530.28430.8951-0.3914-0.73090.05210.8309-0.0196-0.20190.96740.10570.69434.820862.213337.0557
1192.1047-0.1658-1.26291.1606-0.68462.5206-0.2824-0.15950.26610.896-0.2549-0.4538-1.0755-0.35340.23041.26390.0115-0.27260.55650.05660.815841.044468.730744.2737
1202.72730.38550.89531.5067-0.46891.9068-0.50490.06810.77920.02140.1562-0.0821-0.49920.12130.27030.6882-0.0024-0.11720.3762-0.04630.723147.502661.237453.2939
1211.2047-0.36690.87711.64290.01571.313-0.27340.86910.5867-0.4450.0331-0.1849-0.41620.54580.15720.6203-0.1966-0.03640.84770.2280.566151.499657.60940.7001
1222.88230.3948-0.29111.21370.30723.40910.19662.2490.493-0.4158-0.1652-0.45230.23520.85260.05810.682-0.00280.11611.27060.05730.548960.884445.249740.0364
1234.8024-0.35681.06563.7367-0.59682.942-0.08510.70780.2448-0.3338-0.37980.09370.27940.37110.31860.4866-0.0710.03850.5783-0.05010.42453.393443.829950.85
1240.1813-0.3340.21960.80.12260.9114-0.23240.07480.02570.0050.1286-0.3428-0.07980.62040.05080.3826-0.10370.05240.57720.0470.475656.047948.908554.927
1254.1426-1.2677-0.3392.4161-0.2231.3359-0.4951-0.33540.51610.06340.2672-0.5455-0.1174-0.05270.15580.36530.0273-0.07760.5182-0.06850.442953.756548.797362.8965
1264.08060.4346-0.67811.0822-0.27592.3708-0.1655-0.091-0.136-0.110.195-0.3251-0.35550.57160.04480.32080.0076-0.04620.5426-0.14510.496652.771451.675262.3363
1271.94330.1772-0.97832.78821.32362.1392-0.19840.09720.3421-0.3040.2004-0.3135-0.37070.46470.02290.5914-0.0644-0.12240.3325-0.03830.576336.490975.356669.0273
1281.28980.0478-0.09321.3710.25111.2122-0.26530.16060.617-0.1883-0.0321-0.1372-0.2322-0.09720.22380.42680.065-0.11780.4775-0.07560.577725.293863.982465.1354
1290.02030.2492-0.17991.6298-0.42141.6796-0.2381-0.39370.35950.0661-0.0510.2362-0.4426-0.47030.23510.47680.1322-0.12020.4535-0.19980.606624.409869.851773.3588
1301.37950.61680.03712.0414-0.42071.2246-0.2343-0.23820.33970.5324-0.25480.6053-0.4255-0.67520.39390.51930.1256-0.00830.6419-0.25160.646216.490763.339580.5349
1314.48680.93360.10822.38350.52411.5893-0.298-0.64520.45890.29310.10680.00340.4384-0.01550.1370.54480.0904-0.04680.4569-0.16710.402821.525351.754474.3567
1322.1383-0.394-0.20081.02720.61141.285-0.13470.20910.05780.1058-0.03060.2422-0.0872-0.27540.11470.3560.0568-0.08120.4854-0.12620.483520.153550.386664.4906
1335.6247-0.8429-1.62491.80030.55862.03930.0836-0.4634-0.4295-0.2282-0.18010.2306-0.0751-0.10030.14420.422-0.0635-0.06950.5367-0.12420.485322.128850.857760.509
1341.71140.5463-1.37055.09150.87961.5031-0.4728-0.1540.0745-0.4541-0.17070.5047-0.5737-0.02660.48281.0052-0.0183-0.27970.35640.13330.6036-6.876384.3618-17.3317
1353.90650.1263-2.4792.9481-0.22754.4001-0.26360.07270.18760.6663-0.1237-0.2623-0.7533-0.19070.34411.12270.0308-0.1910.35270.03190.6392-4.528882.4604-8.4891
1362.3289-0.55670.75752.0405-0.65031.5706-0.3429-0.53930.48820.4294-0.03280.0769-0.2625-0.09020.32310.83010.013-0.09250.306-0.04380.59733.422773.3284-5.4868
1371.56640.0060.37771.3910.56691.4825-0.22280.31850.7139-0.10550.0192-0.2937-0.55220.22210.140.8859-0.1625-0.11220.37140.13650.68619.357874.97-15.1713
1380.6668-1.1111-0.7145.02893.36433.426-0.24980.4770.5291-0.1478-0.2937-0.3373-0.49640.00030.48191.2305-0.0598-0.16760.44550.09310.52350.865380.2108-22.089
1391.2493-0.53850.62221.00840.07410.67130.03190.51350.3822-0.3428-0.3249-0.3756-0.10340.41790.25080.7947-0.1238-0.05720.52370.15140.605712.590769.5338-22.0179
1403.1431-0.90280.69023.19850.13772.13160.47251.0964-0.3514-0.2953-0.4015-0.0168-0.076-0.12180.02120.7208-0.1040.05370.27220.04540.50610.612256.721-17.9854
1413.72640.2777-1.01041.0427-0.23561.40570.42340.1738-0.03310.2839-0.2611-0.32140.0040.1545-0.1290.5043-0.1037-0.09190.32240.06990.518312.039561.8613-10.6028
1424.2872-2.1118-1.13881.846-0.40342.42320.4057-0.1206-0.12420.1345-0.4837-0.5801-0.12970.59870.04650.5369-0.16580.01060.23530.05730.543112.64152.7101-7.9533
1435.7586-1.5695-2.82111.61470.8282.4362-0.3562-0.29730.39430.55570.301-0.4874-0.09310.1585-0.04130.67430.0042-0.13390.37870.04680.41496.905862.1474-0.1111
1444.75821.0659-1.58631.3699-0.47382.2992-0.0490.3790.23480.43620.1924-0.2751-0.05040.0523-0.08460.6610.0394-0.04120.27950.01080.42448.645660.4354-3.0151
1450.7977-0.8088-0.17341.5324-0.74681.1095-0.07551.52210.9103-0.054-0.2741-0.0694-0.36-0.1095-0.00940.7836-0.0285-0.08410.7120.50960.8082-13.35195.5025-69.9167
1462.16930.29880.10322.4922-0.28520.60390.21012.29521.0589-0.6550.0027-0.0052-0.06890.6692-0.00180.86070.02450.08781.06510.67990.6174-1.7554-0.7044-72.1647
1470.905-0.30570.98520.4247-0.55081.33780.34492.1340.4994-0.8393-0.3946-0.15240.04660.33720.15690.9420.21750.09311.90870.66050.1808-0.9884-4.9433-79.2508
1481.3351-0.33870.20261.384-0.40771.51490.31260.51150.0131-0.2228-0.3066-0.08190.13530.5738-0.00460.5497-0.02310.04550.49810.13030.3883-0.3181-14.202-63.3349
1493.8264-0.3867-1.2571.2881-0.51872.471-0.15770.28040.28270.34510.0733-0.3813-0.28180.00270.01410.5563-0.0226-0.10420.33980.10180.4033-3.4412-7.629-54.2915
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 2 through 35 )A2 - 35
2X-RAY DIFFRACTION2chain 'A' and (resid 36 through 143 )A36 - 143
3X-RAY DIFFRACTION3chain 'A' and (resid 144 through 218 )A144 - 218
4X-RAY DIFFRACTION4chain 'B' and (resid 2 through 35 )B2 - 35
5X-RAY DIFFRACTION5chain 'B' and (resid 36 through 136 )B36 - 136
6X-RAY DIFFRACTION6chain 'B' and (resid 137 through 188 )B137 - 188
7X-RAY DIFFRACTION7chain 'B' and (resid 189 through 216 )B189 - 216
8X-RAY DIFFRACTION8chain 'C' and (resid 2 through 16 )C2 - 16
9X-RAY DIFFRACTION9chain 'C' and (resid 17 through 35 )C17 - 35
10X-RAY DIFFRACTION10chain 'C' and (resid 36 through 57 )C36 - 57
11X-RAY DIFFRACTION11chain 'C' and (resid 58 through 143 )C58 - 143
12X-RAY DIFFRACTION12chain 'C' and (resid 144 through 156 )C144 - 156
13X-RAY DIFFRACTION13chain 'C' and (resid 157 through 188 )C157 - 188
14X-RAY DIFFRACTION14chain 'C' and (resid 189 through 199 )C189 - 199
15X-RAY DIFFRACTION15chain 'C' and (resid 200 through 217 )C200 - 217
16X-RAY DIFFRACTION16chain 'D' and (resid 2 through 70 )D2 - 70
17X-RAY DIFFRACTION17chain 'D' and (resid 71 through 136 )D71 - 136
18X-RAY DIFFRACTION18chain 'D' and (resid 137 through 156 )D137 - 156
19X-RAY DIFFRACTION19chain 'D' and (resid 157 through 188 )D157 - 188
20X-RAY DIFFRACTION20chain 'D' and (resid 189 through 216 )D189 - 216
21X-RAY DIFFRACTION21chain 'E' and (resid 2 through 21 )E2 - 21
22X-RAY DIFFRACTION22chain 'E' and (resid 22 through 70 )E22 - 70
23X-RAY DIFFRACTION23chain 'E' and (resid 71 through 105 )E71 - 105
24X-RAY DIFFRACTION24chain 'E' and (resid 106 through 136 )E106 - 136
25X-RAY DIFFRACTION25chain 'E' and (resid 137 through 188 )E137 - 188
26X-RAY DIFFRACTION26chain 'E' and (resid 189 through 216 )E189 - 216
27X-RAY DIFFRACTION27chain 'F' and (resid 2 through 16 )F2 - 16
28X-RAY DIFFRACTION28chain 'F' and (resid 17 through 35 )F17 - 35
29X-RAY DIFFRACTION29chain 'F' and (resid 36 through 57 )F36 - 57
30X-RAY DIFFRACTION30chain 'F' and (resid 58 through 70 )F58 - 70
31X-RAY DIFFRACTION31chain 'F' and (resid 71 through 92 )F71 - 92
32X-RAY DIFFRACTION32chain 'F' and (resid 93 through 129 )F93 - 129
33X-RAY DIFFRACTION33chain 'F' and (resid 130 through 143 )F130 - 143
34X-RAY DIFFRACTION34chain 'F' and (resid 144 through 156 )F144 - 156
35X-RAY DIFFRACTION35chain 'F' and (resid 157 through 176 )F157 - 176
36X-RAY DIFFRACTION36chain 'F' and (resid 177 through 199 )F177 - 199
37X-RAY DIFFRACTION37chain 'F' and (resid 200 through 217 )F200 - 217
38X-RAY DIFFRACTION38chain 'G' and (resid 2 through 35 )G2 - 35
39X-RAY DIFFRACTION39chain 'G' and (resid 36 through 143 )G36 - 143
40X-RAY DIFFRACTION40chain 'G' and (resid 144 through 156 )G144 - 156
41X-RAY DIFFRACTION41chain 'G' and (resid 157 through 218 )G157 - 218
42X-RAY DIFFRACTION42chain 'H' and (resid 2 through 16 )H2 - 16
43X-RAY DIFFRACTION43chain 'H' and (resid 17 through 35 )H17 - 35
44X-RAY DIFFRACTION44chain 'H' and (resid 36 through 57 )H36 - 57
45X-RAY DIFFRACTION45chain 'H' and (resid 58 through 105 )H58 - 105
46X-RAY DIFFRACTION46chain 'H' and (resid 106 through 143 )H106 - 143
47X-RAY DIFFRACTION47chain 'H' and (resid 144 through 156 )H144 - 156
48X-RAY DIFFRACTION48chain 'H' and (resid 157 through 199 )H157 - 199
49X-RAY DIFFRACTION49chain 'H' and (resid 200 through 217 )H200 - 217
50X-RAY DIFFRACTION50chain 'I' and (resid 2 through 35 )I2 - 35
51X-RAY DIFFRACTION51chain 'I' and (resid 36 through 156 )I36 - 156
52X-RAY DIFFRACTION52chain 'I' and (resid 157 through 199 )I157 - 199
53X-RAY DIFFRACTION53chain 'I' and (resid 200 through 216 )I200 - 216
54X-RAY DIFFRACTION54chain 'J' and (resid 2 through 16 )J2 - 16
55X-RAY DIFFRACTION55chain 'J' and (resid 17 through 35 )J17 - 35
56X-RAY DIFFRACTION56chain 'J' and (resid 36 through 57 )J36 - 57
57X-RAY DIFFRACTION57chain 'J' and (resid 58 through 92 )J58 - 92
58X-RAY DIFFRACTION58chain 'J' and (resid 93 through 106 )J93 - 106
59X-RAY DIFFRACTION59chain 'J' and (resid 107 through 143 )J107 - 143
60X-RAY DIFFRACTION60chain 'J' and (resid 144 through 156 )J144 - 156
61X-RAY DIFFRACTION61chain 'J' and (resid 157 through 188 )J157 - 188
62X-RAY DIFFRACTION62chain 'J' and (resid 189 through 217 )J189 - 217
63X-RAY DIFFRACTION63chain 'K' and (resid 2 through 57 )K2 - 57
64X-RAY DIFFRACTION64chain 'K' and (resid 58 through 143 )K58 - 143
65X-RAY DIFFRACTION65chain 'K' and (resid 144 through 216 )K144 - 216
66X-RAY DIFFRACTION66chain 'L' and (resid 2 through 35 )L2 - 35
67X-RAY DIFFRACTION67chain 'L' and (resid 36 through 143 )L36 - 143
68X-RAY DIFFRACTION68chain 'L' and (resid 144 through 217 )L144 - 217
69X-RAY DIFFRACTION69chain 'M' and (resid 2 through 70 )M2 - 70
70X-RAY DIFFRACTION70chain 'M' and (resid 71 through 156 )M71 - 156
71X-RAY DIFFRACTION71chain 'M' and (resid 157 through 216 )M157 - 216
72X-RAY DIFFRACTION72chain 'N' and (resid 2 through 16 )N2 - 16
73X-RAY DIFFRACTION73chain 'N' and (resid 17 through 35 )N17 - 35
74X-RAY DIFFRACTION74chain 'N' and (resid 36 through 57 )N36 - 57
75X-RAY DIFFRACTION75chain 'N' and (resid 58 through 106 )N58 - 106
76X-RAY DIFFRACTION76chain 'N' and (resid 107 through 143 )N107 - 143
77X-RAY DIFFRACTION77chain 'N' and (resid 144 through 156 )N144 - 156
78X-RAY DIFFRACTION78chain 'N' and (resid 157 through 176 )N157 - 176
79X-RAY DIFFRACTION79chain 'N' and (resid 177 through 199 )N177 - 199
80X-RAY DIFFRACTION80chain 'N' and (resid 200 through 217 )N200 - 217
81X-RAY DIFFRACTION81chain 'O' and (resid 2 through 16 )O2 - 16
82X-RAY DIFFRACTION82chain 'O' and (resid 17 through 35 )O17 - 35
83X-RAY DIFFRACTION83chain 'O' and (resid 36 through 57 )O36 - 57
84X-RAY DIFFRACTION84chain 'O' and (resid 58 through 118 )O58 - 118
85X-RAY DIFFRACTION85chain 'O' and (resid 119 through 156 )O119 - 156
86X-RAY DIFFRACTION86chain 'O' and (resid 157 through 188 )O157 - 188
87X-RAY DIFFRACTION87chain 'O' and (resid 189 through 199 )O189 - 199
88X-RAY DIFFRACTION88chain 'O' and (resid 200 through 217 )O200 - 217
89X-RAY DIFFRACTION89chain 'P' and (resid 2 through 16 )P2 - 16
90X-RAY DIFFRACTION90chain 'P' and (resid 17 through 35 )P17 - 35
91X-RAY DIFFRACTION91chain 'P' and (resid 36 through 57 )P36 - 57
92X-RAY DIFFRACTION92chain 'P' and (resid 58 through 92 )P58 - 92
93X-RAY DIFFRACTION93chain 'P' and (resid 93 through 118 )P93 - 118
94X-RAY DIFFRACTION94chain 'P' and (resid 119 through 143 )P119 - 143
95X-RAY DIFFRACTION95chain 'P' and (resid 144 through 156 )P144 - 156
96X-RAY DIFFRACTION96chain 'P' and (resid 157 through 176 )P157 - 176
97X-RAY DIFFRACTION97chain 'P' and (resid 177 through 199 )P177 - 199
98X-RAY DIFFRACTION98chain 'P' and (resid 200 through 216 )P200 - 216
99X-RAY DIFFRACTION99chain 'Q' and (resid 2 through 70 )Q2 - 70
100X-RAY DIFFRACTION100chain 'Q' and (resid 71 through 136 )Q71 - 136
101X-RAY DIFFRACTION101chain 'Q' and (resid 137 through 217 )Q137 - 217
102X-RAY DIFFRACTION102chain 'R' and (resid 2 through 35 )R2 - 35
103X-RAY DIFFRACTION103chain 'R' and (resid 36 through 57 )R36 - 57
104X-RAY DIFFRACTION104chain 'R' and (resid 58 through 136 )R58 - 136
105X-RAY DIFFRACTION105chain 'R' and (resid 137 through 188 )R137 - 188
106X-RAY DIFFRACTION106chain 'R' and (resid 189 through 218 )R189 - 218
107X-RAY DIFFRACTION107chain 'S' and (resid 2 through 16 )S2 - 16
108X-RAY DIFFRACTION108chain 'S' and (resid 17 through 36 )S17 - 36
109X-RAY DIFFRACTION109chain 'S' and (resid 37 through 57 )S37 - 57
110X-RAY DIFFRACTION110chain 'S' and (resid 58 through 92 )S58 - 92
111X-RAY DIFFRACTION111chain 'S' and (resid 93 through 136 )S93 - 136
112X-RAY DIFFRACTION112chain 'S' and (resid 137 through 156 )S137 - 156
113X-RAY DIFFRACTION113chain 'S' and (resid 157 through 216 )S157 - 216
114X-RAY DIFFRACTION114chain 'T' and (resid 2 through 70 )T2 - 70
115X-RAY DIFFRACTION115chain 'T' and (resid 71 through 143 )T71 - 143
116X-RAY DIFFRACTION116chain 'T' and (resid 144 through 156 )T144 - 156
117X-RAY DIFFRACTION117chain 'T' and (resid 157 through 216 )T157 - 216
118X-RAY DIFFRACTION118chain 'U' and (resid 2 through 16 )U2 - 16
119X-RAY DIFFRACTION119chain 'U' and (resid 17 through 35 )U17 - 35
120X-RAY DIFFRACTION120chain 'U' and (resid 36 through 57 )U36 - 57
121X-RAY DIFFRACTION121chain 'U' and (resid 58 through 118 )U58 - 118
122X-RAY DIFFRACTION122chain 'U' and (resid 119 through 136 )U119 - 136
123X-RAY DIFFRACTION123chain 'U' and (resid 137 through 156 )U137 - 156
124X-RAY DIFFRACTION124chain 'U' and (resid 157 through 176 )U157 - 176
125X-RAY DIFFRACTION125chain 'U' and (resid 177 through 199 )U177 - 199
126X-RAY DIFFRACTION126chain 'U' and (resid 200 through 216 )U200 - 216
127X-RAY DIFFRACTION127chain 'V' and (resid 2 through 35 )V2 - 35
128X-RAY DIFFRACTION128chain 'V' and (resid 36 through 70 )V36 - 70
129X-RAY DIFFRACTION129chain 'V' and (resid 71 through 106 )V71 - 106
130X-RAY DIFFRACTION130chain 'V' and (resid 107 through 136 )V107 - 136
131X-RAY DIFFRACTION131chain 'V' and (resid 137 through 156 )V137 - 156
132X-RAY DIFFRACTION132chain 'V' and (resid 157 through 199 )V157 - 199
133X-RAY DIFFRACTION133chain 'V' and (resid 200 through 216 )V200 - 216
134X-RAY DIFFRACTION134chain 'W' and (resid 2 through 21 )W2 - 21
135X-RAY DIFFRACTION135chain 'W' and (resid 22 through 35 )W22 - 35
136X-RAY DIFFRACTION136chain 'W' and (resid 36 through 57 )W36 - 57
137X-RAY DIFFRACTION137chain 'W' and (resid 58 through 92 )W58 - 92
138X-RAY DIFFRACTION138chain 'W' and (resid 93 through 106 )W93 - 106
139X-RAY DIFFRACTION139chain 'W' and (resid 107 through 143 )W107 - 143
140X-RAY DIFFRACTION140chain 'W' and (resid 144 through 156 )W144 - 156
141X-RAY DIFFRACTION141chain 'W' and (resid 157 through 176 )W157 - 176
142X-RAY DIFFRACTION142chain 'W' and (resid 177 through 188 )W177 - 188
143X-RAY DIFFRACTION143chain 'W' and (resid 189 through 199 )W189 - 199
144X-RAY DIFFRACTION144chain 'W' and (resid 200 through 216 )W200 - 216
145X-RAY DIFFRACTION145chain 'X' and (resid 2 through 57 )X2 - 57
146X-RAY DIFFRACTION146chain 'X' and (resid 58 through 92 )X58 - 92
147X-RAY DIFFRACTION147chain 'X' and (resid 93 through 136 )X93 - 136
148X-RAY DIFFRACTION148chain 'X' and (resid 137 through 188 )X137 - 188
149X-RAY DIFFRACTION149chain 'X' and (resid 189 through 216 )X189 - 216

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る