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Yorodumi- PDB-1ddo: REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ddo | ||||||
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Title | REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP | ||||||
Components | D-AMINO ACID OXIDASE | ||||||
Keywords | FLAVOENZYME / FAD COFACTOR / OXIDOREDUCTASE | ||||||
Function / homology | Function and homology information Peroxisomal protein import / Glyoxylate metabolism and glycine degradation / D-alanine catabolic process / D-amino-acid oxidase / D-amino-acid oxidase activity / proline catabolic process / D-serine catabolic process / D-amino acid catabolic process / dopamine biosynthetic process / presynaptic active zone ...Peroxisomal protein import / Glyoxylate metabolism and glycine degradation / D-alanine catabolic process / D-amino-acid oxidase / D-amino-acid oxidase activity / proline catabolic process / D-serine catabolic process / D-amino acid catabolic process / dopamine biosynthetic process / presynaptic active zone / neutrophil-mediated killing of gram-negative bacterium / peroxisomal matrix / digestion / FAD binding / peroxisome / cytoplasm Similarity search - Function | ||||||
Biological species | Sus scrofa (pig) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / DENSITY AVERAGING / Resolution: 3.1 Å | ||||||
Authors | Todone, F. / Mattevi, A. | ||||||
Citation | Journal: Biochemistry / Year: 1997 Title: Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Authors: Todone, F. / Vanoni, M.A. / Mozzarelli, A. / Bolognesi, M. / Coda, A. / Curti, B. / Mattevi, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ddo.cif.gz | 555.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ddo.ent.gz | 456.9 KB | Display | PDB format |
PDBx/mmJSON format | 1ddo.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ddo_validation.pdf.gz | 2.3 MB | Display | wwPDB validaton report |
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Full document | 1ddo_full_validation.pdf.gz | 2.4 MB | Display | |
Data in XML | 1ddo_validation.xml.gz | 121.2 KB | Display | |
Data in CIF | 1ddo_validation.cif.gz | 156.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dd/1ddo ftp://data.pdbj.org/pub/pdb/validation_reports/dd/1ddo | HTTPS FTP |
-Related structure data
Related structure data | 1daoC 1kifS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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-Components
#1: Protein | Mass: 39377.812 Da / Num. of mol.: 8 / Source method: isolated from a natural source / Source: (natural) Sus scrofa (pig) / Organ: KIDNEY / Organelle: PEROXISOME / References: UniProt: P00371, D-amino-acid oxidase #2: Chemical | ChemComp-FAD / #3: Chemical | ChemComp-ITR / #4: Chemical | #5: Water | ChemComp-HOH / | |
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