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Structure paper

TitleA mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.
Journal, issue, pagesRsc Chem Biol, Vol. 2, Page 1608-1617, Year 2021
Publish dateFeb 10, 2020 (structure data deposition date)
AuthorsBaeriswyl, S. / Personne, H. / Di Bonaventura, I. / Kohler, T. / van Delden, C. / Stocker, A. / Javor, S. / Reymond, J.L.
External linksRsc Chem Biol / PubMed:34977576
MethodsX-ray diffraction
Resolution0.9 - 2.02 Å
Structure data

PDB-6y0u:
Fucosylated Bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.5 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.489 Å

PDB-6y0v:
Fucosylated bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.7 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-6y13:
Bicyclic stapled peptide bp70 at 1.1 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.112 Å

PDB-6y14:
Bicyclic peptide bp65 crystallized as racemic mixture at 0.9 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 0.9 Å

PDB-6y1s:
Bicyclic peptide bp70 in I4132 at 1.0 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.04 Å

PDB-7nef:
Fucosylated linear peptide Fln65 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.5 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.51 Å

PDB-7new:
Fucosylated heterochiral linear peptide Fdln69 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 2.0 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-ZDC:
3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid

ChemComp-HOH:
WATER

ChemComp-CIT:
CITRIC ACID

Source
  • pseudomonas aeruginosa (bacteria)
  • synthetic construct (others)
KeywordsANTIBIOTIC / Antimicrobial / Bicyclic / Lectin / Stapled / Antimicrobial peptide / ANTIMICROBIAL PROTEIN

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