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IF

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Structure paper

TitleDetect, correct, retract: How to manage incorrect structural models.
Journal, issue, pagesFEBS J., Vol. 285, Page 444-466, Year 2018
Publish dateApr 4, 2017 (structure data deposition date)
AuthorsWlodawer, A. / Dauter, Z. / Porebski, P.J. / Minor, W. / Stanfield, R. / Jaskolski, M. / Pozharski, E. / Weichenberger, C.X. / Rupp, B.
External linksFEBS J. / PubMed:29113027
MethodsX-ray diffraction
Resolution1.49 - 2.81 Å
Structure data

PDB-5veh:
Re-refinement OF THE PDB STRUCTURE 1yiz of Aedes aegypti kynurenine aminotransferase
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-5vep:
MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2F
Method: X-RAY DIFFRACTION / Resolution: 2.59 Å

PDB-5veq:
MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2Y
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-5ver:
MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2Z
Method: X-RAY DIFFRACTION / Resolution: 2.81 Å

PDB-5vet:
PHOSPHOLIPASE A2, RE-REFINEMENT OF THE PDB STRUCTURE 1JQ8 WITHOUT THE PUTATIVE COMPLEXED OLIGOPEPTIDE
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5vf2:
scFv 2D10 re-refined as a complex with trehalose replacing the original alpha-1,6-mannobiose
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-5vf5:
Crystal structure of the vicilin from Solanum melongena, re-refinement
Method: X-RAY DIFFRACTION / Resolution: 1.49 Å

PDB-5vga:
Alternative model for Fab 36-65
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-BR:
BROMIDE ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-CA:
Unknown entry

ChemComp-PMP:
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-UNX:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-CU:
COPPER (II) ION

ChemComp-MLI:
MALONATE ION

Source
  • aedes aegypti (yellow fever mosquito)
  • mus musculus (house mouse)
  • daboia russellii pulchella (snake)
  • solanum melongena (plant)
KeywordsTRANSFERASE / Re-refinement / kynurenine aminotransferase / mosquito / AMINOTRANSFERASE III / MOUSE / HYDROLASE / PHOSPHOLIPASE A2 / IMMUNE SYSTEM / IMMUNE SYSTEM RE-REFINEMENT / PLANT PROTEIN / 7S VICILIN SM80.1 PLANT PROTEIN SEQUENCE ASSIGNMENT RE-REFINEMENT / germline antibody anti-arsonate

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