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Structure paper

TitleMolecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Journal, issue, pagesNat Commun, Vol. 9, Page 1043-1043, Year 2018
Publish dateSep 9, 2016 (structure data deposition date)
AuthorsPluvinage, B. / Grondin, J.M. / Amundsen, C. / Klassen, L. / Moote, P.E. / Xiao, Y. / Thomas, D. / Pudlo, N.A. / Anele, A. / Martens, E.C. ...Pluvinage, B. / Grondin, J.M. / Amundsen, C. / Klassen, L. / Moote, P.E. / Xiao, Y. / Thomas, D. / Pudlo, N.A. / Anele, A. / Martens, E.C. / Inglis, G.D. / Uwiera, R.E.R. / Boraston, A.B. / Abbott, D.W.
External linksNat Commun / PubMed:29535379
MethodsX-ray diffraction
Resolution1.4 - 2.6 Å
Structure data

PDB-5t98:
Crystal structure of BuGH2Awt
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5t99:
Crystal structure of BuGH2Awt in complex with Galactoisofagomine
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5t9a:
Crystal structure of BuGH2Cwt
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5t9g:
Crystal structure of BuGH2Cwt in complex with Galactoisofagomine
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5t9x:
Crystal structure of BuGH16Bwt
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5ta0:
Crystal structure of BuGH86E322Q in complex with neoagarooctaose
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-5ta1:
Crystal structure of BuGH86wt
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5ta5:
Crystal structure of BuGH86wt in complex with neoagarooctaose
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-5ta7:
Crystal structure of BuGH117Bwt
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-5ta9:
Crystal structure of BuGH117Bwt in complex with neoagarobiose
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-GIF:
D-galacto-isofagomine

ChemComp-SO4:
SULFATE ION

ChemComp-NA:
Unknown entry

ChemComp-IMD:
IMIDAZOLE

ChemComp-GOL:
GLYCEROL

ChemComp-CA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-GAL:
beta-D-galactopyranose

ChemComp-AAL:
3,6-anhydro-alpha-L-galactopyranose

Source
  • bacteroides uniformis (bacteria)
KeywordsHYDROLASE / (alpha/beta)6 barrel / glycoside hydrolase / agarase

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