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Structure paper

TitleStructure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations.
Journal, issue, pagesActa Crystallogr D Struct Biol, Vol. 74, Page 861-876, Year 2018
Publish dateMay 21, 2016 (structure data deposition date)
AuthorsAdjogatse, E. / Erskine, P. / Wells, S.A. / Kelly, J.M. / Wilden, J.D. / Chan, A.W.E. / Selwood, D. / Coker, A. / Wood, S. / Cooper, J.B.
External linksActa Crystallogr D Struct Biol / PubMed:30198897
MethodsX-ray diffraction
Resolution1.45 - 2.3 Å
Structure data

PDB-5k4q:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NAD+ refined to 2.3 angstroms
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5k4t:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei refined to 2.1 angstroms
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5k4u:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei showing different active site loop conformations between dimer subunits, refined to 1.9 angstroms
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5k4v:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NAD+ refined to 2.2 angstroms
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5k4w:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NADH and L-threonine refined to 1.72 angstroms
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-5k4y:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei refined to 1.77 angstroms
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-5k50:
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NAD+ and L-allo-threonine refined to 2.23 angstroms
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-5l9a:
L-threonine dehydrogenase from trypanosoma brucei.
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-5lc1:
L-threonine dehydrogenase from Trypanosoma brucei with NAD and the inhibitor pyruvate bound.
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-ACT:
ACETATE ION

ChemComp-NA:
Unknown entry

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

ChemComp-THR:
THREONINE

ChemComp-CL:
Unknown entry

ChemComp-ALO:
ALLO-THREONINE

ChemComp-PYR:
PYRUVIC ACID

ChemComp-BME:
BETA-MERCAPTOETHANOL

Source
  • trypanosoma brucei (eukaryote)
KeywordsOXIDOREDUCTASE / short-chain dehydrogenase / ligand-bound / holo / apo / oxidoreuctase / threonine / Apo-enzyme / Rossmann fold / dehydrogenase / holo-enzyme / Rossman fold

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