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Structure paper

TitleA Distinct Type of Pilus from the Human Microbiome.
Journal, issue, pagesCell, Vol. 165, Page 690-703, Year 2016
Publish dateJan 25, 2010 (structure data deposition date)
AuthorsXu, Q. / Shoji, M. / Shibata, S. / Naito, M. / Sato, K. / Elsliger, M.A. / Grant, J.C. / Axelrod, H.L. / Chiu, H.J. / Farr, C.L. ...Xu, Q. / Shoji, M. / Shibata, S. / Naito, M. / Sato, K. / Elsliger, M.A. / Grant, J.C. / Axelrod, H.L. / Chiu, H.J. / Farr, C.L. / Jaroszewski, L. / Knuth, M.W. / Deacon, A.M. / Godzik, A. / Lesley, S.A. / Curtis, M.A. / Nakayama, K. / Wilson, I.A.
External linksCell / PubMed:27062925
MethodsX-ray diffraction
Resolution1.3 - 3 Å
Structure data

PDB-3liu:
Crystal structure of Putative cell adhesion protein (YP_001304840.1) from Parabacteroides distasonis ATCC 8503 at 2.05 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3pay:
Crystal structure of a putative adhesin (BACOVA_04077) from Bacteroides ovatus at 2.50 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3r4r:
Crystal structure of a fimbrial assembly protein (BDI_3522) from Parabacteroides distasonis ATCC 8503 at 2.38 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-3sy6:
Crystal structure of a fimbrial protein BF1861 [Bacteroides fragilis NCTC 9343] (BF1861) from Bacteroides fragilis NCTC 9343 at 1.90 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3t2l:
Crystal structure of a Putative cell adhesion protein (BF1858) from Bacteroides fragilis NCTC 9343 at 2.33 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.33 Å

PDB-3ufi:
Crystal structure of a putative cell adhesion protein (BACOVA_04980) from Bacteroides ovatus ATCC 8483 at 2.18 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.18 Å

PDB-3up6:
Crystal structure of a putative cell adhesion protein (BACOVA_04078) from Bacteroides ovatus ATCC 8483 at 2.80 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-4dgu:
Crystal structure of a putative cell adhesion protein (BT0320) from Bacteroides thetaiotaomicron VPI-5482 at 2.37 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-4eps:
Crystal structure of a fimbrial protein (BACOVA_04982) from Bacteroides ovatus ATCC 8483 at 1.85 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-4gpv:
Crystal structure of a putative cell adhesion protein (BACEGG_00536) from Bacteroides eggerthii DSM 20697 at 1.67 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-4h40:
Crystal structure of a putative cell adhesion protein (BF2867) from Bacteroides fragilis NCTC 9343 at 2.57 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.57 Å

PDB-4jg5:
Crystal structure of a putative cell adhesion protein (BDI_3519) from Parabacteroides distasonis ATCC 8503 at 2.34 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-4jrf:
Crystal structure of a putative cell adhesion protein (BACOVA_01548) from Bacteroides ovatus ATCC 8483 at 1.98 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-4k4k:
Crystal structure of a putative cell adhesion protein (BACUNI_00621) from Bacteroides uniformis ATCC 8492 at 1.67 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-4q98:
Crystal structure of a fimbrilin (fimA) from Porphyromonas gingivalis W83 at 1.30 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-4qb7:
Crystal structure of a fimbrial protein (BVU_2522) from Bacteroides vulgatus ATCC 8482 at 2.55 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-4qdg:
Crystal structure of a putative adhesin (BT2657) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4rdb:
Crystal structure of an immunoreactive 32 kDa antigen PG49 (PG_0181) from Porphyromonas gingivalis W83 at 1.45 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-5cag:
Crystal structure of a putative adhesin (BACOVA_02677) from Bacteroides ovatus ATCC 8483 at 3.00 A resolution (PSI Community Target, Nakayama)
Method: X-RAY DIFFRACTION / Resolution: 3 Å

Chemicals

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NHE:
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID / pH buffer*YM

ChemComp-ZN:
Unknown entry

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-CA:
Unknown entry

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-ACN:
ACETONE

Source
  • parabacteroides distasonis (bacteria)
  • bacteroides ovatus (bacteria)
  • bacteroides fragilis (bacteria)
  • bacteroides thetaiotaomicron (bacteria)
  • bacteroides eggerthii (bacteria)
  • bacteroides uniformis (bacteria)
  • porphyromonas gingivalis (bacteria)
  • bacteroides vulgatus (bacteria)
KeywordsCELL ADHESION / Structural Genomics / Joint Center for Structural Genomics / JCSG / Protein Structure Initiative / PSI-2 / PSI-BIOLOGY / transthyretin-like (also known as prealbumin-like) / FIMBRIAL PROTEIN / ADHESION / Prealbumin-like fold / Major fimbrial subunit protein (FimA) / Cell adhesion protein / fimbrial related protein / Unknown Function / HYPOTHETICAL PROTEIN (DUF3988) / PF06321 family / Fimbriae like protein / PF08842 family / Fimbrillin-like protein / PF13149 family / DUF3988 / PF06321 / Type IV / PF15495 / Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 / Putative cell adhesion protein / PF16249 family / DUF4906 / adhesin

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