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Structure paper

TitleStructural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-Coumaric acid and related aromatic acids.
Journal, issue, pagesProteins, Vol. 81, Page 1709-1726, Year 2013
Publish dateApr 27, 2011 (structure data deposition date)
AuthorsTan, K. / Chang, C. / Cuff, M. / Osipiuk, J. / Landorf, E. / Mack, J.C. / Zerbs, S. / Joachimiak, A. / Collart, F.R.
External linksProteins / PubMed:23606130
MethodsX-ray diffraction
Resolution1.201 - 2.201 Å
Structure data

PDB-3rpw:
The crystal structure of an ABC transporter from Rhodopseudomonas palustris CGA009
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-3sg0:
The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2
Method: X-RAY DIFFRACTION / Resolution: 1.201 Å

PDB-3tx6:
The Structure of a putative ABC-transporter periplasmic component from Rhodopseudomonas palustris
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-3uk0:
RPD_1889 protein, an extracellular ligand-binding receptor from Rhodopseudomonas palustris.
Method: X-RAY DIFFRACTION / Resolution: 1.49 Å

PDB-3ukj:
Crystal structure of extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4dqd:
The crystal structure of a transporter in complex with 3-phenylpyruvic acid
Method: X-RAY DIFFRACTION / Resolution: 1.601 Å

PDB-4eyo:
Crystal structure of solute binding protein of ABC transporter from Rhodopseudomonas palustris HaA2 in complex with p-coumaric acid
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

PDB-4eyq:
Crystal structure of solute binding protein of ABC transporter from Rhodopseudomonas palustris HaA2 in complex with caffeic acid/3-(4-HYDROXY-PHENYL)PYRUVIC ACID
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-4f8j:
The structure of an aromatic compound transport protein from Rhodopseudomonas palustris in complex with p-coumarate
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4fb4:
The Structure of an ABC-Transporter Family Protein from Rhodopseudomonas palustris in Complex with Caffeic Acid
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-4i1d:
The crystal structure of an ABC transporter substrate-binding protein from Bradyrhizobium japonicum USDA 110
Method: X-RAY DIFFRACTION / Resolution: 2.201 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-FMT:
FORMIC ACID

ChemComp-URE:
UREA

ChemComp-HOH:
WATER

ChemComp-173:
BENZOYL-FORMIC ACID

ChemComp-SO4:
SULFATE ION

ChemComp-ENO:
3-(4-HYDROXY-PHENYL)PYRUVIC ACID

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ACY:
ACETIC ACID

ChemComp-CL:
Unknown entry

ChemComp-PR:
PRASEODYMIUM ION

ChemComp-PPY:
3-PHENYLPYRUVIC ACID

ChemComp-3PY:
3-HYDROXYPYRUVIC ACID

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-HC4:
4'-HYDROXYCINNAMIC ACID

ChemComp-DHC:
CAFFEIC ACID

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-ACT:
ACETATE ION

ChemComp-MLT:
D-MALATE

Source
  • rhodopseudomonas palustris (phototrophic)
  • bradyrhizobium japonicum (bacteria)
KeywordsTRANSPORT PROTEIN / structural genomics / PSI-Biology / protein structure initiative / midwest center for structural genomics / MCSG / SIGNALING PROTEIN / ligand-binding / putative branched-chain amino acid / AMINO-ACID TRANSPORT / EXTRACELLULAR RECEPTOR / transporter / midwest center for structural ge nomics / lignin degradation product / lignin degratation / alpha/beta / aromatic compound transport / aromatic compounds

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