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Structure paper

TitleMechanism of Substrate and Inhibitor Binding of Rhodobacter Capsulatus Xanthine Dehydrogenase.
Journal, issue, pagesJ. Biol. Chem., Vol. 284, Page 8768-, Year 2009
Publish dateNov 14, 2008 (structure data deposition date)
AuthorsDietzel, U. / Kuper, J. / Doebbler, J.A. / Schulte, A. / Truglio, J.J. / Leimkuhler, S. / Kisker, C.
External linksJ. Biol. Chem. / PubMed:19109249
MethodsX-ray diffraction
Resolution2.6 - 3.4 Å
Structure data

PDB-2w3r:
Crystal Structure of Xanthine Dehydrogenase (desulfo form) from Rhodobacter capsulatus in complex with hypoxanthine
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-2w3s:
Crystal Structure of Xanthine Dehydrogenase (desulfo form) from Rhodobacter capsulatus in Complex with Xanthine
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-2w54:
Crystal Structure of Xanthine Dehydrogenase from Rhodobacter capsulatus in Complex with Bound Inhibitor Pterin-6-aldehyde
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-2w55:
Crystal Structure of Xanthine Dehydrogenase (E232Q variant) from Rhodobacter capsulatus in Complex with Hypoxanthine
Method: X-RAY DIFFRACTION / Resolution: 3.4 Å

Chemicals

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER / Iron–sulfur cluster

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM / Flavin adenine dinucleotide

ChemComp-MTE:
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER

ChemComp-CA:
Unknown entry

ChemComp-HPA:
HYPOXANTHINE / Hypoxanthine

ChemComp-MOM:
HYDROXY(DIOXO)MOLYBDENUM

ChemComp-HOH:
WATER / Water

ChemComp-XAN:
XANTHINE / Xanthine

ChemComp-XAX:
{[(5aR,8R,9aR)-2-amino-4-oxo-6,7-di(sulfanyl-kappaS)-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogenato(2-) phosphate}(hydroxy)oxo(thioxo)molybdenum

ChemComp-BA:
Unknown entry

ChemComp-HHR:
6-HYDROXYMETHYLPTERIN

Source
  • rhodobacter capsulatus (bacteria)
KeywordsOXIDOREDUCTASE / XDH / GOUT / IRON / XANTHINE / IRON-SULFUR / MOLYBDENUM COFACTOR / HYPOXANTHINE / METAL-BINDING / XO / PURINE METABOLISM / HYPERURICEMIA / XANTHINE OXIDASE / PURINE CATABOLISM / P6A

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