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Structure paper

TitleMolecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler
Journal, issue, pagesCell(Cambridge,Mass. ), Year 2024
Publish dateMar 13, 2024 (structure data deposition date)
AuthorsLouder RK / Park G / Ye Z / Cha JS / Gardner AM / Lei Q / Ranjan A / Hollmuller E / Stengel F / Pugh BF / Wu C
External linksCell(Cambridge,Mass. ) / Search PubMed
MethodsEM (single particle)
Resolution3.3 - 7.3 Å
Structure data

44074

9b1d

EMDB-44074, PDB-9b1d:
Cryo-EM structure of native SWR1 bound to DNA (composite structure)
Method: EM (single particle) / Resolution: 3.3 Å

44075

9b1e

EMDB-44075, PDB-9b1e:
Cryo-EM structure of native SWR1 bound to nucleosome (composite structure)
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-44093: Cryo-EM structure of native SWR1, free complex (composite structure)
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-44106: Cryo-EM structure of native SWR1 bound to DNA (consensus map)
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-44107: RuvBL core from SWR1-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-44108: Swr1 ATPase domain from SWR1-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 4.5 Å

EMDB-44109: Arp6/Swc6 module from SWR1-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-44110: Cryo-EM structure of native SWR1 bound to DNA (unmasked refinement filtered by local resolution)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-44307: Cryo-EM structure of native SWR1 bound to nucleosome (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 6.2 Å

EMDB-44308: RuvBL-associated core from SWR1-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-44309: Nucleosome and bound Swr1 ATPase from SWR1-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-44310: Swc3-Swc2 subcomplex from SWR1-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 7.3 Å

EMDB-44311: Cryo-EM structure of native SWR1, free complex (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 4.8 Å

EMDB-44312: RuvBL core from free SWR1 complex (focused refinement)
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-44313: Arp6/Swc6 module from free SWR1 complex (focused refinement)
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-46065: Cryo-EM structure of native SWR1 bound to DNA in the absence of nucleotide (composite structure)
Method: EM (single particle) / Resolution: 5.8 Å

EMDB-46066: Cryo-EM structure of native SWR1 bound to DNA in the absence of nucleotide (consensus map)
Method: EM (single particle) / Resolution: 5.8 Å

EMDB-46067: RuvBL core from SWR1(apo)-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 5.5 Å

EMDB-46068: Arp6/Swc6 module from SWR1(apo)-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 7.2 Å

EMDB-46069: Swr1 ATPase domain from SWR1(apo)-DNA complex (focused refinement)
Method: EM (single particle) / Resolution: 7.1 Å

Chemicals

ChemComp-AGS:
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / ATP-gamma-S, energy-carrying molecule analogue*YM

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-BEF:
BERYLLIUM TRIFLUORIDE ION

Source
  • saccharomyces cerevisiae (brewer's yeast)
  • saccharomyces cerevisiae w303 (yeast)
  • synthetic construct (others)
  • drosophila melanogaster (fruit fly)
KeywordsGENE REGULATION / Chromatin Remodeler / Snf2 family ATPase / histone exchange / H2A.Z

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