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Structure paper

TitleA stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana
Journal, issue, pagesNat Commun, Vol. 16, Page 6910, Year 2025
Publish dateJan 11, 2025 (structure data deposition date)
AuthorsCaferri, R. / Zhou, Q. / Dall’Osto, L. / Amelii, A. / Shan, J. / Liu, Z. / Bassi, R.
External linksNat Commun / Search PubMed
MethodsEM (single particle)
Resolution2.9 - 3.2 Å
Structure data

EMDB-63096: The structure of the Lhcb8-CP47 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-63097: The structure of Lhcb8-LHCII-CP26 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-63098: The consensus map of the Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-63163: The structure of Lhcb4.1-LHCII-CP26 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-63164: The structure of the CS from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-63165: The structure of the Lhcb4.1-CP47 from Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-63166: The consensus map of the Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.1 Å

63167

9lk4

EMDB-63167, PDB-9lk4:
Cryo-EM structure of Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.1 Å

63168

9lk5

EMDB-63168, PDB-9lk5:
The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: EM (single particle) / Resolution: 3.0 Å

Chemicals

ChemComp-CLA:
CHLOROPHYLL A

ChemComp-PHO:
PHEOPHYTIN A

ChemComp-BCR:
BETA-CAROTENE

ChemComp-SQD:
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

ChemComp-LMG:
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

ChemComp-DGD:
DIGALACTOSYL DIACYL GLYCEROL (DGDG)

ChemComp-FE2:
Unknown entry

ChemComp-LHG:
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / phospholipid*YM

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-PL9:
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-CHL:
CHLOROPHYLL B

ChemComp-LUT:
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL

ChemComp-NEX:
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL

ChemComp-XAT:
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-VTQ:
RRR-ALPHA-TOCOPHERYLQUINONE

Source
  • arabidopsis thaliana (thale cress)
KeywordsPHOTOSYNTHESIS / Photosystem II / light harvesting / photoacclimation / stress-induced antennae / cryo-EM

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