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Structure paper

TitleBisected Cap Group Modifications Provides Basis for Improved Pharmacokinetics of HDAC Inhibitors
Journal, issue, pagesJ. Med. Chem., Year 2025
Publish dateNov 20, 2024 (structure data deposition date)
AuthorsOlaoye, O. / Erdogan, F. / Gunning, P.T.
External linksJ. Med. Chem. / Search PubMed
MethodsX-ray diffraction
Resolution1.24 - 1.27 Å
Structure data

PDB-9efc:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-588
Method: X-RAY DIFFRACTION / Resolution: 1.26 Å

PDB-9efr:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-600
Method: X-RAY DIFFRACTION / Resolution: 1.24 Å

PDB-9efx:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-584
Method: X-RAY DIFFRACTION / Resolution: 1.262 Å

PDB-9egf:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-589
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-9egu:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-599
Method: X-RAY DIFFRACTION / Resolution: 1.27 Å

Chemicals

PDB-1bhy:
LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF P64K FROM MASC DATA

ChemComp-ZN:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

PDB-1bhx:
X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357

PDB-1bhw:
LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF XYLOSE ISOMERASE FROM MASC DATA

PDB-1bh8:
HTAFII18/HTAFII28 HETERODIMER CRYSTAL STRUCTURE

PDB-1bh9:
HTAFII18/HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH BOUND PCMBS

Source
  • danio rerio (zebrafish)
KeywordsMETAL BINDING PROTEIN / potassium ion binding / alkali metal ion binding / ion binding / cation binding / metal ion binding / catalytic activity / hydrolase activity / deacetylase activity / protein deacetylase activity / acting on a protein / acting on carbon-nitrogen (but not peptide) bonds / in linear amides / tubulin deacetylase activity / zinc ion binding / transition metal ion binding

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