EMDB/PDB/SASBDBから引用されている文献のデータベース

キーワード
構造解析手法	All X線回折 NMR 電子顕微鏡小角散乱中性子線回折線維回折粉末回折赤外分光 EPR FRET 理論モデルハイブリッド
著者・登録者
ジャーナル
IF	>30 >20 >10 >5 all

タイトル	Designing small molecules targeting a cryptic RNA binding site through base displacement.
ジャーナル・号・ページ	Nat. Chem. Biol., Year 2025
掲載日	2024年10月26日 (構造データの登録日)
著者	Olenginski, L.T. / Wierzba, A.J. / Laursen, S.P. / Batey, R.T.
リンク	Nat. Chem. Biol. / PubMed:40883492
手法	X線回折
解像度	1.36 - 2.8 Å
構造データ	PDB-9e50: TAD from Carmabin Biosynthetic Pathway in complex with NAD - Crystal Form 2 手法: X-RAY DIFFRACTION / 解像度: 1.68 Å PDB-9e5h: env2 cobalamin riboswitch aptamer domain in complex with cyanocobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.8 Å PDB-9e5i: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-nitrobenzene-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.42 Å PDB-9e5j: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-methoxybenzene-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.35 Å PDB-9e5k: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-3-methylbenzene-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.9 Å PDB-9e5l: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-benzothiophene-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.43 Å PDB-9e5m: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4,1'-biphenyl-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.39 Å PDB-9e5o: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-pyrene-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.36 Å PDB-9e5p: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-benzofuran-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.36 Å PDB-9e5q: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-N-phenylpropiolamide-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 1.36 Å PDB-9e5r: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-N-ethylpropiolamide-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.34 Å PDB-9e5s: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-(4-phenyl-2,3,4-triazole)-propanamine-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.55 Å PDB-9e5t: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-(4-phenyl-2,3,4-triazole)-guanidinium-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.19 Å PDB-9elr: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-2-naphthalenepropiolate-cobalamin 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-9mfh: env2 cobalamin riboswitch aptamer domain in the apo state 手法: X-RAY DIFFRACTION / 解像度: 2.7 Å
化合物	ChemComp-NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NADYM ChemComp-IOD: IODIDE ION / ヨ-ジド ChemComp-HOH: WATER ChemComp-CNC: CYANOCOBALAMIN ChemComp-N3D: N-methylpropane-1,3-diamine / N-メチル-1,3-プロパンジアミン ChemComp-TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / トリス(ヒドロキシメチル)メチルアンモニウム / pH緩衝剤YM ChemComp-MG: Unknown entry / マグネシウムジカチオン ChemComp-K: Unknown entry / カリウムカチオン PDB-1ben: INSULIN COMPLEXED WITH 4-HYDROXYBENZAMIDE PDB-1bes: INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C PEROXIDASE PDB 未公開エントリ PDB-1ber: Unknown entry PDB-1bet: NEW PROTEIN FOLD REVEALED BY A 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NERVE GROWTH FACTOR PDB-1beu: TRP SYNTHASE (D60N-IPP-SER) WITH K+ PDB-1bew: Unknown entry PDB-1bex: STRUCTURE OF RUTHENIUM-MODIFIED PSEUDOMONAS AERUGINOSA AZURIN PDB-1bey: ANTIBODY TO CAMPATH-1H HUMANIZED FAB PDB-1bez: HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR AT PH 5 PDB-1be0: HALOALKANE DEHALOGENASE AT PH 5.0 CONTAINING ACETIC ACID PDB-1be1: GLUTAMATE MUTASE (B12-BINDING SUBUNIT), NMR, MINIMIZED AVERAGE STRUCTURE PDB-1bi7: MECHANISM OF G1 CYCLIN DEPENDENT KINASE INHIBITION FROM THE STRUCTURE OF THE CDK6-P16INK4A TUMOR SUPPRESSOR COMPLEX
由来	moorena producens 3l (バクテリア) marine metagenome (メタゲノム)
キーワード	BIOSYNTHETIC PROTEIN / NAD-binding / RNA / riboswitch / aptamer / vitamin B12 / cobalamin