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TitleIn silico lambda-dynamics predicts protein binding specificities to modified RNAs.
Journal, issue, pagesNucleic Acids Res., Vol. 53, Year 2025
Publish dateApr 16, 2023 (structure data deposition date)
AuthorsAngelo, M. / Zhang, W. / Vilseck, J.Z. / Aoki, S.T.
External linksNucleic Acids Res. / PubMed:40066880
MethodsX-ray diffraction
Resolution1.94 - 3.06 Å
Structure data

PDB-8sip:
Structure of a mouse IgG antibody fragment that binds Inosine, an RNA modification
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-8tca:
Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, no ligand
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

PDB-8vev:
Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, m6A nucleoside ligand
Method: X-RAY DIFFRACTION / Resolution: 3.06 Å

Chemicals

ChemComp-NOS:
INOSINE

ChemComp-HOH:
WATER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-SO4:
SULFATE ION

ChemComp-6MD:
N-methyladenosine

ChemComp-CL:
Unknown entry

Source
  • mus musculus (house mouse)
KeywordsIMMUNE SYSTEM / IgG Fab / Inosine / RNA binding protein / modified RNA / small molecule ligand / IgG / Fab / m6A / RNA / N6-methyladenosine (m6A) / RNA binding protein (RBP)

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