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Structure paper

TitlePyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Journal, issue, pagesNucleic Acids Res., Vol. 46, Page 5875-5885, Year 2018
Publish dateNov 23, 2017 (structure data deposition date)
AuthorsKottur, J. / Nair, D.T.
External linksNucleic Acids Res. / PubMed:29850882
MethodsX-ray diffraction
Resolution1.74 - 2.35 Å
Structure data

PDB-5yur:
DNA polymerase IV - DNA ternary complex 1
Method: X-RAY DIFFRACTION / Resolution: 2.035 Å

PDB-5yus:
DNA polymerase IV - DNA ternary complex 2
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-5yut:
DNA polymerase IV - DNA ternary complex 3
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5yuu:
DNA polymerase IV - DNA ternary complex 4
Method: X-RAY DIFFRACTION / Resolution: 1.892 Å

PDB-5yuv:
DNA polymerase IV - DNA ternary complex 5
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-5yuw:
DNA polymerase IV - DNA ternary complex 6
Method: X-RAY DIFFRACTION / Resolution: 2.124 Å

PDB-5yux:
DNA polymerase IV - DNA ternary complex 8
Method: X-RAY DIFFRACTION / Resolution: 2.04 Å

PDB-5yuy:
DNA polymerase IV - DNA ternary complex 9
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

PDB-5yuz:
DNA polymerase IV - DNA ternary complex 11
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-5yv0:
DNA polymerase IV - DNA ternary complex 12
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-5yv1:
DNA polymerase IV - DNA ternary complex 13
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-5yv2:
DNA polymerase IV - DNA ternary complex 14
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5yv3:
DNA polymerase IV - DNA ternary complex 7
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-5yyd:
DNA polymerase IV - ternary complex 15
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-5yye:
DNA polymerase IV - ternary complex 16
Method: X-RAY DIFFRACTION / Resolution: 2.325 Å

PDB-5zlv:
DNA polymerase IV - DNA ternary complex with 50mM MgCl2
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-6ig1:
DNA polymerase IV - DNA ternary complex 10
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

Chemicals

ChemComp-TTP:
THYMIDINE-5'-TRIPHOSPHATE

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-DPO:
DIPHOSPHATE

ChemComp-PO4:
PHOSPHATE ION

ChemComp-TTW:
5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine

Source
  • escherichia coli k-12 (bacteria)
  • escherichia coli (E. coli)
  • escherichia coli (strain k12) (bacteria)
KeywordsDNA BINDING PROTEIN/DNA / DNA POLYMERASE / DNA BINDING PROTEIN-DNA complex / DNA BINDING PROTEIN / DNA BINDING PROTEIN/DAN / DNA BINDING PROTEIN-DAN complex

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