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Structure paper

TitleTwisted Schiff base intermediates and substrate locale revise transaldolase mechanism.
Journal, issue, pagesNat. Chem. Biol., Vol. 7, Page 678-684, Year 2011
Publish dateMay 13, 2011 (structure data deposition date)
AuthorsLehwess-Litzmann, A. / Neumann, P. / Parthier, C. / Ludtke, S. / Golbik, R. / Ficner, R. / Tittmann, K.
External linksNat. Chem. Biol. / PubMed:21857661
MethodsX-ray diffraction
Resolution1.65 - 1.9 Å
Structure data

PDB-3s0c:
Transaldolase wt of Thermoplasma acidophilum
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-3s1u:
Transaldolase from Thermoplasma acidophilum in complex with D-erythrose 4-phosphate
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3s1v:
Transaldolase from Thermoplasma acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3s1w:
Transaldolase variant Lys86Ala from Thermoplasma acidophilum in complex with glycerol and citrate
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3s1x:
Transaldolase from Thermoplasma acidophilum in complex with D-sedoheptulose 7-phosphate Schiff-base intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-E4P:
ERYTHOSE-4-PHOSPHATE

ChemComp-CL:
Unknown entry

ChemComp-F6R:
FRUCTOSE -6-PHOSPHATE

ChemComp-FLC:
CITRATE ANION

ChemComp-I22:
D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE

Source
  • thermoplasma acidophilum (acidophilic)
KeywordsTRANSFERASE / ALPHA-BETA BARREL / DOMAIN SWAPPING / PROTEIN DYNAMICS / CONFORMATIONAL SELECTION

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