Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
Journal, issue, pages	J. Virol., Vol. 83, Page 7142-7150, Year 2009
Publish date	Oct 10, 2005 (structure data deposition date)
Authors	Jeudy, S. / Lartigue, A. / Claverie, J.M. / Abergel, C.
External links	J. Virol. / PubMed:19439473
Methods	X-ray diffraction
Resolution	1.5 - 2.8 Å
Structure data	PDB-2b8p: Crystal structure of Acanthamoeba polyphaga mimivirus NDK, the first viral nucleoside diphosphate kinase Method: X-RAY DIFFRACTION / Resolution: 2.55 Å PDB-2b8q: X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with TDP Method: X-RAY DIFFRACTION / Resolution: 2.5 Å PDB-3b6b: Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dGDP Method: X-RAY DIFFRACTION / Resolution: 2.0 Å PDB-3ddi: Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with TDP Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-3dkd: Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with GDP Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-3ee3: Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with CDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3eic: X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with UDP Method: X-RAY DIFFRACTION / Resolution: 2.3 Å PDB-3ejm: Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP Method: X-RAY DIFFRACTION / Resolution: 1.95 Å PDB-3elh: X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with dUDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3em1: Crystal structure of the mimivirus NDK +Kpn-N62L double mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 1.5 Å PDB-3emt: Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-3ena: Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dGDP Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-3etm: Crystal structure of the mimivirus NDK +KPN-N62L-R107G triple mutant complexed with CDP Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-3evm: Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dCDP Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-3evo: Crystal structure of the Mimivirus NDK +Kpn mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 1.5 Å PDB-3evw: Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-3fbb: Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with UDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3fbc: Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-3fbe: Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3fbf: Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-3fc9: Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP Method: X-RAY DIFFRACTION / Resolution: 2.8 Å PDB-3fcv: Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dUDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3fcw: Crystal structure of the Mimivirus NDK N62L mutant complexed with UDP Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-3g2x: Structure of mimivirus NDK +Kpn - N62L double mutant complexed with dTDP Method: X-RAY DIFFRACTION / Resolution: 2.7 Å PDB-3gp9: Crystal structure of the Mimivirus NDK complexed with GDP Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-3gpa: Crystal structure of the Mimivirus NDK N62L mutant complexed with CDP Method: X-RAY DIFFRACTION / Resolution: 2.0 Å
Chemicals	ChemComp-SO4: SULFATE ION / Sulfate ChemComp-HOH: WATER / Water ChemComp-MG: Unknown entry ChemComp-TYD: THYMIDINE-5'-DIPHOSPHATE / Thymidine diphosphate ChemComp-PO4: PHOSPHATE ION / Phosphate ChemComp-DGI: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE / Deoxyguanosine diphosphate ChemComp-GDP: GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying moleculeYM / Guanosine diphosphate ChemComp-CDP: CYTIDINE-5'-DIPHOSPHATE / Cytidine diphosphate ChemComp-UDP: URIDINE-5'-DIPHOSPHATE / UDPYM / Uridine diphosphate ChemComp-DUD: DEOXYURIDINE-5'-DIPHOSPHATE ChemComp-YYY: DEOXYCYTIDINE DIPHOSPHATE / Deoxycytidine diphosphate ChemComp-CTP: CYTIDINE-5'-TRIPHOSPHATE / Cytidine triphosphate
Source	mimivirus acanthamoeba polyphaga mimivirus
Keywords	TRANSFERASE / NDK / phosphotransferase / nucleotide binding / TDP / phosphotranferase / NUCLEOTIDE BINDING PROTEIN / ATP-binding / Kinase / Magnesium / Metal-binding / Nucleotide metabolism / Nucleotide-binding / Phosphorylation / TDP phosphotransferase / Phosphoprotein / NDK Phosphotransferase nucleotide binding / phosphotransferase ATP-binding mimivirus / NDK Mimivirus phosphotransferase nucleotide binding / nucleoside diphosphate kinase mimivirus phosphotransferase nucleotide binding / phosphotransferase nucleotide binding / nucleoside diphosphate kinase phosphotransferase nucleotide binding