[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 51 items for (author: zhang & dk)

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-64999:
The cryo-EM structure of human Piezo2-MDFIC2 complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65000:
The cryo-EM structure of human Piezo2-MDFIC2 complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65001:
The cryo-EM structure of human Piezo2-MDFIC2 complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65002:
The cryo-EM structure of human Piezo2-MDFIC complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65003:
The cryo-EM structure of human Piezo2-MDFIC complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65004:
The cryo-EM structure of human Piezo2-MDFIC complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

PDB-9ved:
The cryo-EM structure of mouse Piezo1-MDFI complex
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vee:
The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vef:
The cryo-EM structure of human Piezo2-MDFIC complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-44881:
Structure of Src in complex with beta-arrestin 1 revealing SH3 binding sites
Method: single particle / : Pakharukova N, Bansia H, Bassford DK, des Georges A, Lefkowitz RJ

EMDB-45977:
Structure of SH3 domain of Src in complex with beta-arrestin 1
Method: single particle / : Pakharukova N, Bansia H, des Georges A, Lefkowitz RJ

EMDB-45982:
Structure of SH3 domain of Src in complex with beta-arrestin 1
Method: single particle / : Pakharukova N, Bansia H, Lefkowitz RJ, des Georges A

EMDB-18614:
Inactivated tick-borne encephalitis virus (TBEV) vaccine strain Sofjin-Chumakov
Method: single particle / : Moiseenko AV, Zhang Y, Vorovitch M, Ivanova A, Liu Z, Osolodkin DI, Egorov A, Ishmukhametov A, Sokolova OS

PDB-8qrh:
Inactivated tick-borne encephalitis virus (TBEV) vaccine strain Sofjin-Chumakov
Method: single particle / : Moiseenko AV, Zhang Y, Vorovitch M, Ivanova A, Liu Z, Osolodkin DI, Egorov A, Ishmukhametov A, Sokolova OS

EMDB-41409:
Cryo-EM structure of PCSK9 mimic HIT01-K21Q-R218E with AMG145 Fab
Method: single particle / : Cheng J, Kwong PD

EMDB-28910:
Glycan-Base ConC Env Trimer
Method: single particle / : Olia AS, Kwong PD

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-29725:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

EMDB-29731:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-29396:
Antibody vFP53.02 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-29836:
vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-29880:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 1)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29881:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 2)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29882:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 3)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29905:
vFP48.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-14332:
1.58 A STRUCTURE OF HUMAN APOFERRITIN OBTAINED FROM TITAN KRIOS 2 AT eBIC, DLS UNDER COMMISSIONING SESSION CM26464-2
Method: single particle / : Clare DK

EMDB-23813:
Autoinhibited B-Raf:(14-3-3)2:MEK complex with resolved RBD
Method: single particle / : Martinez Fiesco JA, Ping Z

EMDB-23814:
Autoinhibited B-Raf:(14-3-3)2 complex with resolved RBD
Method: single particle / : Martinez Fiesco JA, Ping Z

EMDB-23815:
Dimeric (B-Raf)2:(14-3-3)2 complex bound to SB590885 Inhibitor
Method: single particle / : Martinez Fiesco JA, Ping Z

EMDB-11932:
CryoEM structure of the super-constricted two-start dynamin 1 filament
Method: helical / : Liu JW, Zhang PJ

EMDB-22788:
Cryo-EM structure of the HCMV pentamer bound by Fabs 2-18 and 8I21
Method: single particle / : Wrapp D, McLellan JS

EMDB-23629:
Cryo-EM structure of the HCMV pentamer bound by human neuropilin 2
Method: single particle / : Wrapp D, McLellan JS

EMDB-23640:
Cryo-EM structure of the HCMV pentamer bound by antibodies 1-103, 1-32 and 2-25
Method: single particle / : Wrapp D, McLellan JS

EMDB-22165:
Assembly intermediates of orthoreovirus captured in the cell
Method: subtomogram averaging / : Sutton G, Sun DP

EMDB-22166:
Assembly intermediates of orthoreovirus captured in the cell
Method: subtomogram averaging / : Sutton G, Sun DP

EMDB-22164:
Assembly intermediates of orthoreovirus captured in the cell
Method: subtomogram averaging / : Sutton G, Sun DP, Fu XF, Kotecha A, Hecksel GW, Clare DK, Zhang P, Stuart D, Boyce M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more